| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1169 |
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| Symbol | |
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| ID | 8414042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1305186 |
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| End bp | 1309613 |
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| Gene Length | 4428 bp |
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| Protein Length | 1475 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 645022758 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_003180188 |
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| Protein GI | 257784971 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00437832 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000255692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | GTGGCAGATT TCGATTCCAC TGAATTTGAC GCTATTAAAA TTTCTTTAGC GTCTGCTGAT
GATATCCGCG GTTGGTCCTA TGGCGAGGTA AAAAAGCCTG AGACCATCAA CTACCGTACT
CTTAAGCCAG AAAAGGATGG TCTTTTCTGC GAGAAGATCT TTGGACCTGT GAGGGACTGG
GAGTGCGCCT GCGGTAAGTA CAAAGGCATT CGTTTCAAGG GCATTACTTG CGAGCGCTGC
GGTGTTGAAG TAACCACCGC AAAGGTTCGT CGTGACCGCA TGGGTCACAT CGAGCTTGCT
GCTCCTGTAA GCCACATTTG GTACTTTAAG AGTCCAACCA GCTTCCCTCT GGCACGTCTT
CTTGACATCA AGAGCAAAGA CCTCGAGAAA GTCCTCTACT TTGCATCTTA CGTGATTACC
AGTGTTGACA CTGAGGCACG TGAGGCTGAT GTAGACGATC TTCGTGAGGA GCTTGCTGCA
GACCTTGAAG AGCTCGACGC AGAGCGTGAC GATCAGATTG CACGTCTTCG TGAGCAGGGC
CAGCCACAGG ATGACGAGTT TGGCGATTTT GAGCCTCTTT CTGAGGATGA GATTCGCGCA
GGCGTCGCTG ATCTTGAGGA AGAGTACGAG GAAGAGAAGA CGCTTCGTCG TGAGGCTTTC
GAGAAGTTCA TGCAGCTTGA GACCAGAGAG CTCATCTCCG ATGAAGGTCT GTTCTCCGAG
CTTAAGCGCT ATTATGGCAT CTACTTCAAG GGTGGCATGG GTGCAGAGGC AGTCCGCGAT
CTTCTTTCCA ACATTGACCT TGAGAAAGAG GCTAAGGAGC TCCGCGCTAT TATCGCCAAT
GAGGATGCTC AGAAGCAGAA GCGCGAGAAG GCTATCAAGC GCCTTGAGAT TGTTGACGCC
TTCCTTAAGG GCGGTAATGA TCCAGCTAAC ATGATCCTTG ACGTTGTACC AGTTATCCCA
CCTGATCTTC GTCCTATGGT TCAGCTTGAT GGTGGCCGTT TTGCAGCTTC TGACTTAAAC
GATTTGTATC GTCGTGTTAT TAACCGTAAC AATCGTCTTA AGCGCCTGCT TGATCTTGAG
GCACCTTCTA TCATTGTTAA CAACGAGAAG CGTATGCTTC AGGAGTCCGT TGATGCTCTG
TTTGACAACG GCCGCCGTGG TCGTCCAGTC ACTGGTCGTG GTGGACGTCC TCTGAAGTCA
CTTGCTGAGG CCCTTAAGGG TAAGCAGGGT CGCTTCCGTC AGAACCTTCT GGGTAAGCGT
GTTGACTATT CTGGCCGTTC CGTCATTGTT GTTGACCCAC ACTTGAAGCT GCACCAGTGC
GGTCTTCCAT CCGCTATGGC ACTTGAGCTC TTCAAGCCAT TTGTCATGCG TCGTTTGGTT
GAGCTCCGCA AGGTTGAAAA CATTAAGGGC GCAAAGCGTG CTATTGACCG TGGTACTCCG
GTTGTTTGGG ACATTTTGGA TGAGGTTATT CAGGATCGTC TTGTTCTTCT CAACCGCGCA
CCTACGCTTC ACCGTCTGTC TATCCAGGCA TTTGAGCCAG TCCTTATTGA GGGTAAGGCA
ATCCACCTGC ACCCACTGGT CTGCGCACCA TTCAACGCAG ACTTCGACGG CGACCAGATG
TCTGTTCACG TGCCACTTTC TACTCAGGCA CAGACAGAGG CTCGCATTCT AATGCTCTCC
AGCAACAACC TTAGAAGCCC TGCTTCTGGT AAGGTTCTGA CCGTTCCTTC TCAGGATATG
GTCTTTGGTG TCTACTACCT TACTTCCGAG AAGACCGGTG CAGATGCTAA GACACTTACC
TTCGCAAGCT TTGAGGATGC TCTCTTGGCA ATTGAGGCCA ACCGCGATCT TGATCTTCAG
GCAAAGGTTG TTGTCCGTGT AAGTACCAAG GATGCAAACG TTGCTGATAG TGGTCGTGCT
ATCTTCCGCG TTATGACTGG CCGTGGTCAG TATGAGGATC TGAACGTTAC TGAGGGAACT
AAGCGTTTTG AGACCACTGT TGGTCGCATT ATTTTCAACC GTCAGTGCCT GCCAGAGGAT
TACCCATACA TCAACTACAA GATGGTTAAG TCCGATATTG GTATTTTGGT CAACGATTGT
TGTGACCGTT ATCCAATGGC TGACGTTGAG CCAATCCTGG ACAACATCAA GAAAACTGGT
TTCCACTACG CAACGCTTGC TGGTCTGACC GTTTCTGTTT GGGATGCTGT TATTCCTGAG
CATAAGCCAC AGCTTCTTCA AGAGGCACAA GATCGCGTTG ACCAGATCAA CGAGTACTAC
GAGGACGGCT TCCTCTCCGA GCGAGAGCGT CACGTTGAGG TTGTTAATGC ATGGACCGAG
TGCACCGATC TTCTCGGCTC TGAGATGCTT GCAGGCTTTG CAGAGGACAA CCCAATCTAC
ATGATGGCTG ACTCTGGAGC TCGTGGTTCT AAGACACAGC TTCGCCAGCT TGCTGGTATG
CGAGGCCTGA TGGCAGATAT GTCTGGTGAA ACCATCGACC TTCCAATTAA GGCAAACTTC
CGTGAGGGTC TTGAGCCTCT TGAGTACTTT ATTTCTACTT ACGGTGCTCG TAAGGGTCTG
GTAGATACCG CTTCTCACAC CTCTGACTCT GGTTACTTGA CTCGTCGACT TGTCGACGTT
GCACAGGACG TCATTGTTCG TGAGGAGGAC TGCGGCACTG ATGAGGCAGT TACTTATCCA
CTGATTAAGC CTGGTCAGAC TTCTGTTGAT ACGGATCTCA TTGGTCGCTG CACCCTTGAG
GATGTCTGCG ATCCAAACAC TGGCGAGGTT CTTATTCCTG CTGGTGGCTA TGTTGAGTCC
AAGCAGGATC TTGAGCGTCT TGTTGAGCAT GGCCTTACTA AGGTTCAGCT CCGTGCGCTT
TTGACCTGTA AGTCTAAGTA CGGCGTCTGC CAGAAGTGCT ACGGTTGGGA TCTTTCTACC
CGTCGCCCCG TCAACATTGG TACTGCAGTT GGTATTATCG CAGCTCAGTC CATTGGTGAG
CCTGGTACTC AGTTGACCAT GCGTACCATT CACTCCGGTG GTGTTGCAGG TGCAGACGAT
ATTACGCAGG GTCTTCCTAC CGTTGCTCGT ATGTTCGACG TCGTTGGTAA TGTCAATGAG
AAGATTCTTG GTCGTGAGGC TGACCTGGCT CCAGTTTCTG GTGTTCTTCA CATCACTCCA
GAGACTACCG AATACTTGCT GCGTATTGTT GATGCAGATG ATGCTTCCCG TGTCATCGAG
GAGTGGCGTG TACCTGCATC CGTCCGCTTC ATGCCTGGCA TTGAGGATGG CGTTGTTGTT
CGTGCTGGTG ATCAGATTAC CCGCGGCTTC GTCAACTTCC GTATGCTCCG TCGACTCACC
GACATTGAGT CCACTATGCA CACCTTCGTT GAGTCCGTTA AGGACGTCTA TACCTCCCAG
GGTGTAGAAC TCAACGATAA GCACATCGAG GTTATCGCAC GTCAGATGCT TCGCCGTGTT
CAGGTTACCA ACCCAGGTGA CTCTTCGTAC CTGCTTGGTC AGTATGTGGA TCGTTACGTC
TTTGCAGAGA CTGTCCAGAA TATTGCCCTT GCTGGTGGTA CTCCACCAGA GGCAGAGCCA
GCAATCCTTG GTACTCTGAA GGTTGCAAGC TCTATTGATT CTTGGCTCTC TAGCGCATCG
TTCATCCGTA CTGCAGGTGT TCTTACCTCT GCAGCTATCG AAGGCGATGT TGACCACCTG
CTTGACCTCA AGTCCAACGT TATTGTTGGT AAGCAGATTC CTGCAGGTAC AGGCCTCTCT
GCATACAACG ATGTTGAGCT TACGTACCAT GGCACCAAGA TTGATGGCCC AACCTCTTCT
CTTGCTAAGT CTCTTCCAGA CTGGGCACCA GCAGAGCTTA AGGACATTGA GGAGCAGCTT
CCTAAGCAGC TTGACTGGGT CAACGAAGAC TACAACGGTG GCGTTTACTC CAAGAATGGC
CGCACGCTTT CTAGCGAGGA CGCAAAGCTT TACCTCTTCG ACGATCTTGG TGTGTCACAG
CGTTGGACCA ACAAGTTCAG TGAGGTTGGC ATTGAGACCG TAGGCGATCT TATTGGCAAG
ACCGAGGAAG ATCTGCTTCG CATCGACGGT ATTGGTGCAA AGGCAATCGA GGAGCTTCGC
GATGGCCTTG AGGCTCGTAA CCTCCTCTAT ATCCTTGAGC CAGAAGAGGA TGAGGCAGAT
TCTGAGGATC TTTCTCAGCT GCTCAACATG GTCTTCTCGC CAGAAGGCGA CGGTGGTCTG
ATGCTGGGTT CTGCAGCTCC ATCTGCTCAC CCTGATTACA CCGAGACGCT CATTGGTTCT
TCTTCTGATG AGGTTAGCCC TGATGTAATT AACGAGGATC TTGGTTCTCT GGATGACCTT
CTCAACCAGG TTGTTCGTAT GGATGCTGAG GCAGGGGATG ACGAGTAA
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| Protein sequence | MADFDSTEFD AIKISLASAD DIRGWSYGEV KKPETINYRT LKPEKDGLFC EKIFGPVRDW
ECACGKYKGI RFKGITCERC GVEVTTAKVR RDRMGHIELA APVSHIWYFK SPTSFPLARL
LDIKSKDLEK VLYFASYVIT SVDTEAREAD VDDLREELAA DLEELDAERD DQIARLREQG
QPQDDEFGDF EPLSEDEIRA GVADLEEEYE EEKTLRREAF EKFMQLETRE LISDEGLFSE
LKRYYGIYFK GGMGAEAVRD LLSNIDLEKE AKELRAIIAN EDAQKQKREK AIKRLEIVDA
FLKGGNDPAN MILDVVPVIP PDLRPMVQLD GGRFAASDLN DLYRRVINRN NRLKRLLDLE
APSIIVNNEK RMLQESVDAL FDNGRRGRPV TGRGGRPLKS LAEALKGKQG RFRQNLLGKR
VDYSGRSVIV VDPHLKLHQC GLPSAMALEL FKPFVMRRLV ELRKVENIKG AKRAIDRGTP
VVWDILDEVI QDRLVLLNRA PTLHRLSIQA FEPVLIEGKA IHLHPLVCAP FNADFDGDQM
SVHVPLSTQA QTEARILMLS SNNLRSPASG KVLTVPSQDM VFGVYYLTSE KTGADAKTLT
FASFEDALLA IEANRDLDLQ AKVVVRVSTK DANVADSGRA IFRVMTGRGQ YEDLNVTEGT
KRFETTVGRI IFNRQCLPED YPYINYKMVK SDIGILVNDC CDRYPMADVE PILDNIKKTG
FHYATLAGLT VSVWDAVIPE HKPQLLQEAQ DRVDQINEYY EDGFLSERER HVEVVNAWTE
CTDLLGSEML AGFAEDNPIY MMADSGARGS KTQLRQLAGM RGLMADMSGE TIDLPIKANF
REGLEPLEYF ISTYGARKGL VDTASHTSDS GYLTRRLVDV AQDVIVREED CGTDEAVTYP
LIKPGQTSVD TDLIGRCTLE DVCDPNTGEV LIPAGGYVES KQDLERLVEH GLTKVQLRAL
LTCKSKYGVC QKCYGWDLST RRPVNIGTAV GIIAAQSIGE PGTQLTMRTI HSGGVAGADD
ITQGLPTVAR MFDVVGNVNE KILGREADLA PVSGVLHITP ETTEYLLRIV DADDASRVIE
EWRVPASVRF MPGIEDGVVV RAGDQITRGF VNFRMLRRLT DIESTMHTFV ESVKDVYTSQ
GVELNDKHIE VIARQMLRRV QVTNPGDSSY LLGQYVDRYV FAETVQNIAL AGGTPPEAEP
AILGTLKVAS SIDSWLSSAS FIRTAGVLTS AAIEGDVDHL LDLKSNVIVG KQIPAGTGLS
AYNDVELTYH GTKIDGPTSS LAKSLPDWAP AELKDIEEQL PKQLDWVNED YNGGVYSKNG
RTLSSEDAKL YLFDDLGVSQ RWTNKFSEVG IETVGDLIGK TEEDLLRIDG IGAKAIEELR
DGLEARNLLY ILEPEEDEAD SEDLSQLLNM VFSPEGDGGL MLGSAAPSAH PDYTETLIGS
SSDEVSPDVI NEDLGSLDDL LNQVVRMDAE AGDDE
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