Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_1133 |
Symbol | |
ID | 8414006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1283726 |
End bp | 1284667 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 645022722 |
Product | DNA-directed RNA polymerase, alpha subunit |
Protein accession | YP_003180152 |
Protein GI | 257784935 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0256815 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.177444 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGAAT TTATCCGACC AAACGTGTCG GTAGATGAAA TCGGCGCAAA CGTCGCTCGT GTGAGCGTAG AGCCGCTTGA GCGTGGCTAT GGTGACACGC TTGGCAACTC CCTCCGCCGC GTACTGCTTT CCTCTCTTGA GGGAGCTGCG GTTGAGGCCA TCCAGATTGA TGGCGTTCAG CATGAGTTCA CTACGGTTGA AGGCGTCTAT GAGGACGTTA CAGATATCGT TCTGAACGTT AAGGGCCTAG TTTTCCGCAA CACCAACAAC TCTGATGAGG CTGAGGCTTC TATCTCTGTT GATGGTCCTT GCACAGTCAC TGGTGCTGAT CTTGATGTTC CTATGGGCTA TGAGCTGGTT AACCCTGCTC AGCACATTTG CGCTCTTGCT GAGGGAGCTC ATCTTTCAAT GAGACTTCGC ATTGGTAATG GTCGCGGTTA TGTTTCTGGT GAGGATAACG AGCGTGAGAA TGATCCAATT GGATTTATTC ACGTTGATTC GATTTTCTCG CCTGTTCGTC GCTGCGCTAA GGCTGTTGAG CCTTGCCGTG TTGGCCGTCA CACCGACTAT GATCGTCTGG TGCTTGAGGT TGAGACCAAT GGTGCAATCA GCCCTCGTGA GGCTGTTGTT GAGGCTGCAA ACATCATTAA CCAGCACATG AGCGCATTCA TGGGACTTAC TGATTTTGAT GAGACTCAGG AAGAGGCTTC GATTTTTGCT AAGGCAGATG TCGAGGATGA TTCCGAGCTT GAGAAGCAGG TTGAGGATTT GGATCTTTCC GTCCGTTCTT ACAACTGTCT CAAGCGTGCA GGAATTCACT CTGTCCGCCA GCTCGTTGAT TTCTCTGAGA ACGATCTTCT CAACATCAGA AACTTTGGTG TTAAGTCTAT TGAAGAAGTC AAGGAAAAGC TCGAGAGCAT GGGCCTGTCC CTTAAGGCTT AG
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Protein sequence | MSEFIRPNVS VDEIGANVAR VSVEPLERGY GDTLGNSLRR VLLSSLEGAA VEAIQIDGVQ HEFTTVEGVY EDVTDIVLNV KGLVFRNTNN SDEAEASISV DGPCTVTGAD LDVPMGYELV NPAQHICALA EGAHLSMRLR IGNGRGYVSG EDNERENDPI GFIHVDSIFS PVRRCAKAVE PCRVGRHTDY DRLVLEVETN GAISPREAVV EAANIINQHM SAFMGLTDFD ETQEEASIFA KADVEDDSEL EKQVEDLDLS VRSYNCLKRA GIHSVRQLVD FSENDLLNIR NFGVKSIEEV KEKLESMGLS LKA
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