Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_1079 |
Symbol | |
ID | 8413952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1222212 |
End bp | 1223042 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 645022668 |
Product | ABC transporter related |
Protein accession | YP_003180098 |
Protein GI | 257784881 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGCTA TTCAATCAGT TCCAACTCAG CCAACTGTTG TGGCTGGACA ATCTTCAGCA CTTACCCCTC ATACCGTTTT GGTTTGCCAA AACCTCGAGA AGTACTATGG AACTCGTGGA AATATTACTA AGGCACTGGA CGGCATTAAT CTTTCTGTAG CTCGTGGCGA GTTCATTGCC ATCATGGGTC CTTCCGGTTC GGGCAAAACT ACGCTTTTGA ACTGCATCTC TACTATTGAT CAGGCATCTG CAGGCCATAT CTTTATTGAT GACCAAGAGC TTTCCAGCCT GCGCGGCTCT GAGCTTTCTG CCTTTAGGCG TGACCGCTTG GGCTTCATTT TCCAGGATGC AAATCTCCTT GACACTCTTA CTGCTCGAGA GAACATTGCC CTATCTTTGA CTATTGGACA TATTCGCGCA CAAGAAGTTT TGGAACGCGT TGATGTTGTT GCTAAATTAC TTCAGATTAC TGATGTATTA GATAAGTTTC CTTATGAGAT GTCTGGCGGT CAGCGTCAGC GTGTTGCAGC TGCACGAGCT ATTGTGACTA ATCCATCTCT TGTGTTAGCA GATGAGCCAA CGGGTGCGTT GGACTCAAAG AATGCACGCA CACTTCTGGA AAGCTTTGAA GGTTTAAATC GTGAAGGCGC AACTATTGCC ATGGTTACTC ACGACTCTTA TGCAGCTTCT TACGCTCATC GCGTCATTTT TATTAAGGAT GGTCGTATTT TTAATGAGAT AGTTCGTGGT GAAAAATCTA GGAAACAATT CTTTGATCAG ATTATGGATG TTGTTTCATT CTTGGGAGGA GAGGGTGCTG ATGTACAGTA A
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Protein sequence | MSAIQSVPTQ PTVVAGQSSA LTPHTVLVCQ NLEKYYGTRG NITKALDGIN LSVARGEFIA IMGPSGSGKT TLLNCISTID QASAGHIFID DQELSSLRGS ELSAFRRDRL GFIFQDANLL DTLTARENIA LSLTIGHIRA QEVLERVDVV AKLLQITDVL DKFPYEMSGG QRQRVAAARA IVTNPSLVLA DEPTGALDSK NARTLLESFE GLNREGATIA MVTHDSYAAS YAHRVIFIKD GRIFNEIVRG EKSRKQFFDQ IMDVVSFLGG EGADVQ
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