| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1034 |
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| Symbol | |
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| ID | 8413907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1165500 |
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| End bp | 1166852 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 645022623 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_003180053 |
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| Protein GI | 257784836 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGTCT TTGAACGCGT TGCTAAGCAA ATTGAGACGC AAGAAGAGAA TGACTCACAA
CTTCAAAAAG AACTATTTCA GAAGGCCAGA AAGAAGTTAA AAGAAAAACT TGTTTCTCGA
TTAGGACTTT CCACGGTTTC TTCTCTTATT ACAGGTAGTG ATATCGATCG TGTAAGAGAT
GAACTAAGAG TTACCTGTGA AGCAATTGTT AATGAAGAAA AGGACGAACT CTTTAGCTCA
GTTGACTATG AGGAAACAAT TGAGCAGGTA ATTAATGAAG TGTGTGGTCT TGGTCCAATT
CAGCCGCTAC TGAATGATAA AGATGTTACC GAAATCATGA TTAATGGCTG CAACAATTTG
TTTTACGAGA AAAATGGTGA GCTATTTGAA TCAAAAACAG TCTTTGACTC GGAAGAACAG
ATTTTGATTG TTATGGATCG CATCTTATCT CCATTAGGTA GAAGACTGGA TAGAGTGAGT
CCTATTGTTG ATGCTCGACT TGAGAATGGG GACCGTGTTA ATGCAGTGGC AAGTCCTGTT
GCAGTGAATG GTACTTCAGT AACTATTCGC AGATTTACCG GAAAAATTAC TTCTTTGGAC
CGGCTGGTGC AAATGGAATC ATTGCCTCAA TGGCTTGCAA GGTTTTTGTC TTGGGCTGTG
AAATGCAGAC AGGGAATCGC GGTTGTTGGC GGCACGGGAT CTGGTAAGAC TACGCTTTTA
AATGCACTTT CATGTGAAAT TTCAAAGTCA GAAAGAATTG TCACTATTGA GGACTCAGCA
GAGCTTAAGT TTGATTCACA TCCAAATGTT GTCAGGCTAG AAGCTCGTCC TGCTTCGATA
GAAGGAACAG GAGAAATAAC AATTAGATCA TTGGTGAGAA ATGCACTTCG AATGAGGCCG
GACCGCATTG TCGTAGGAGA GGTAAGAGGC GAAGAGTGCA TTGATATGTT GCAGGCTATG
AATACAGGTC ATGACGGCTC TCTGACAACA TTGCATGCCG GAACTGCTCA AGAGGCAATA
TTGCGCTTAG TGTTAATGGC TCGTTTTGGA ATGGACTTAC CTGCAGAAAT CATAGAACAG
CAGATAGCAA CTGCACTTGA TTTGATAGTT ATGTCTCAAA GGTTTCCTGA TGGGAAACGG
TATGTGACCA GCGTTTCAGA AATCTCTTTG TCTTCGTCAG GATCAATCGA GGTACAAGAG
GTGGTGTCGT TTGACGTGCA GAAAAGAAGT TGGCTTTTTG TAAAAACTCC TTCTTTTATC
AATCGCGCAA TAAAAGAAGG ATTACTCAAT AAAAAGGAGG TGGCTTCATG GATGTCATTG
CTTCCACAAT CACAGGAGGT GCTTTTGGAG TAA
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| Protein sequence | MLVFERVAKQ IETQEENDSQ LQKELFQKAR KKLKEKLVSR LGLSTVSSLI TGSDIDRVRD
ELRVTCEAIV NEEKDELFSS VDYEETIEQV INEVCGLGPI QPLLNDKDVT EIMINGCNNL
FYEKNGELFE SKTVFDSEEQ ILIVMDRILS PLGRRLDRVS PIVDARLENG DRVNAVASPV
AVNGTSVTIR RFTGKITSLD RLVQMESLPQ WLARFLSWAV KCRQGIAVVG GTGSGKTTLL
NALSCEISKS ERIVTIEDSA ELKFDSHPNV VRLEARPASI EGTGEITIRS LVRNALRMRP
DRIVVGEVRG EECIDMLQAM NTGHDGSLTT LHAGTAQEAI LRLVLMARFG MDLPAEIIEQ
QIATALDLIV MSQRFPDGKR YVTSVSEISL SSSGSIEVQE VVSFDVQKRS WLFVKTPSFI
NRAIKEGLLN KKEVASWMSL LPQSQEVLLE
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