| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0954 |
|---|
| Symbol | |
|---|
| ID | 8413825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1074092 |
|---|
| End bp | 1074886 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 645022542 |
|---|
| Product | peptidase C26 |
|---|
| Protein accession | YP_003179974 |
|---|
| Protein GI | 257784757 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2071] Predicted glutamine amidotransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000028221 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTTATTC CAGATATTGT TAAAGATGCA TTTAGTGATG TTTCAAATCT TCCTGCTTCT
GAGCGTCCTC TTATCTGCGT GACTCCTCGT TGGATGCCTG AAGAGAACTT TTCTGATTCT
GCTTCTGTAG GACAAATTCA GTTTGATGCC ATTCTTGCTG CAGGTGGCAT TCCAATCATG
ATGCCTTTAA CTGAAGATCC AGAGGTTATT GCTCAGTTTG TTGAGATATG TGATGGCTTT
TGTCTTACCG GTGGTCATGA TGTTGATCCA CGTAATTGGG GAGAAGAACC ACGTGACCTC
AACCGTTTAT CTCCTATGAG AGATGCGCTT GAGTTTGAGT TAGTAAAACA AGTGCTTGCT
GCAGATAAAC CATTACTTGC TATCTGTCGC GGTCTTCAGC TTTTAAATGT TGTACTTGGT
GGTACGCTTG CACAAGATTT GCACACGCTT GAACCAGCAG AAAATCATGT ATTTTGGACC
CATGCTGCAA ATCTGTATCA TCCAGCTCAT GCAGTTCATA TTCAAAAAGA TTCTTTGTTA
TATGAAACTT TGGGTAAGGT TGAAGACATC CAGGTAAATT CATACCATGA TGAGGCTTTA
CGAAAAGTAT CCTCTGAGCT CAATGTAGTT GCCTATGCCT CAGACGGCAT TATTGAAGGT
GCTGAGGTTA AGGGAAAGAC GTTTGCCTTA GGTGTACAGT GGCATCCAGA GTATGGATGG
CATTACAGCA AGGCTGACTG CGAACTTTGG AAATCCTTTG TTACAGCTTC ACAAGCTTCA
CGGTCTTCTC GTTAA
|
|---|
| Protein sequence | MVIPDIVKDA FSDVSNLPAS ERPLICVTPR WMPEENFSDS ASVGQIQFDA ILAAGGIPIM
MPLTEDPEVI AQFVEICDGF CLTGGHDVDP RNWGEEPRDL NRLSPMRDAL EFELVKQVLA
ADKPLLAICR GLQLLNVVLG GTLAQDLHTL EPAENHVFWT HAANLYHPAH AVHIQKDSLL
YETLGKVEDI QVNSYHDEAL RKVSSELNVV AYASDGIIEG AEVKGKTFAL GVQWHPEYGW
HYSKADCELW KSFVTASQAS RSSR
|
|---|
| |