Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0946 |
Symbol | |
ID | 8413817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1063910 |
End bp | 1066150 |
Gene Length | 2241 bp |
Protein Length | 746 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 645022534 |
Product | excinuclease ABC, B subunit |
Protein accession | YP_003179966 |
Protein GI | 257784749 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTCAT CTCATGCTGA AGATCAACAT AAAGAGTATA TAGGCGCTGA GCTGCGTCGA TTTGGTCGTG AAGCAGGAGA AGAGAAGCTT CAGGTAGTAT CTCCTTTTGA GCCAGCAGGT GATCAGCCGC AGGCAATAGA AAAGTTGGCT CAAGGAATTG AAGATGGGCT TAGGTATCAG ACACTCTTAG GTGTTACGGG CTCAGGTAAG ACTTTCTCTA TGGCTAAGAC TATCGAGAAA CTCAATCGCC CCACGCTTAT TATGGAACCT AATAAAACGC TGGCCGCTCA GGTTGCTTCA GAGATGAAGG AACTGTTTCC TAACAATGCT GTTGTGTACT TTGTCTCATA TTATGATTAT TACCAGCCAG AAGCGTATGT TCCGCAGTCA GATACGTATA TAGAAAAAGA TGCTTCCATT AATGAAGAGG TAGAGAAGCT CCGTCACCAG GCAACTTCGT CTCTTTTGTC CAGGCGTGAT GTCATTGTTG TTGCATCTGT ATCGTGTATT TACGGTATTG GTAGTCCACA AGATTATGCT GGTCTTGCTC CTAATGTAGA TAAATCTGTT CCTCTTGAGC GCGATGATTT TATTAAAGAT CTTATTAATG TTCAGTACGA TAGAAATGAT TATGACTTGC AGCGTGGCAT GTTTAGGGTT CGTGGAGACG TTGTTGATGT ATTTCCGCCA TATGCAGAAA ATCCGTTGCG TATTGAGTTT TTTGGTGACG AAGTAGAAAG CATTTCAGAG GTTAGTACTG TAACAGGCGA GGTGCTTAGA GAGTTTGACG CTATCCCAAT TTGGCCAGCT TCTCACTATG TTACTGAGCG CCCAAAGATT ACTCATGCTC TTACAACCAT CTCTGAAGAG ATGGAAGCTC GTGTTAAAGA GCTTAAAGAA AACGATAAAC TATTAGAAGC CCAACGTCTT GCTCAGAGAA CAAACTATGA TTTAGAGATG CTTGAGACCA TGGGTTACTG CAATGGTATT GAGAACTATT CCCGCCATTT GGACGGCCGT GCTCCAGGTG AGCCTCCTTA TACACTCATT GACTATTTCC CTAAAGATAT GATTTGCATT ATCGATGAGT CACACGTTAC TGTTCCTCAA ATTAGAGGTA TGTATGAGGG TGATAGATCT CGTAAAGTTA CGCTGGTAGA TCATGGATTT AGACTTCCTT CTGCGCTTGA CAACAGACCA CTCAGATTTG ATGAGTTTGA AGGACGTATC CCTCAGTTTA TTTACGTATC TGCAACTCCT GGAGACTATG AAGAGACAGT GGCTCAGCAA CAAGTTGAGC AGATCATCCG TCCAACTGGT CTTTTGGATC CAAAGATTGA TGTCAGGCCA GTAAGAGGTC AGATTGACGA TCTTATTTCA GAGGTTAAAG AGCGTGTGGC AAAAAAAGAA CGCGTTCTTG TTACTACACT TACTAAACGT ATGGCAGAAG ACCTTACAGA TCACCTGTTA GATGAGGGTA TTAAAGTCAA CTATATGCAC TCAGATACTG CCACACTTGA CCGTGTAGAA ATCATTAGAG ATTTGCGTCA GGGTAAGATT GACGTACTGG TTGGAATTAA CCTTTTACGA GAAGGACTTG ATATTCCTGA GGTTTCTCTT GTTGCTATTC TTGATGCAGA TAAAGAAGGC TTCTTAAGAA ATAGAAGATC TCTCATTCAG ACTATGGGTA GAGCAGCAAG AAATGCTTCT GGTCAGGTTA TTATGTACGC CGATAAAATT ACCGATTCCA TGCGTATTGC TATTGATGAG ACAAAAAGGC GTCGAGAGCT TCAGGAAGCA TTTAACAAAG AGCATGGTAT TGTGCCTAAA ACTGTTAAGA AATCTATTAC TGATATTGCA GGCTTTATCG CTGAAGCCTC AGAGAATATT GATAAGCGTA AGCGCAAAAA TGGAGAGTTT TATACCGCTT CCAATGATGA AGATTCGCTT GAGGAACAGC AAGAATCAAT TCTTGAGATG CCTGCAGAGT TGCTTACTGA AGAGCTTCAA AATCTCCCTC GTTCAGAAGT TGAAGCTATG CTTTCTGGTA TGGAAGCAGA GATGGCAGAA GCTTCTGCGT CTATGGATTA TGAGCACGCG GCAGAACTCA GAGACCAGAT TGTTGCCATC AGAAGCCAGC TTGAGGGTAC TACCTCAGAT GATGTTATTA AAAGGCTTAA GACAGGTGCT AGAAAGGGTA GCGCACACGC TACTCGTAGA CGCTATCGAG GTAAGCATTA G
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Protein sequence | MDSSHAEDQH KEYIGAELRR FGREAGEEKL QVVSPFEPAG DQPQAIEKLA QGIEDGLRYQ TLLGVTGSGK TFSMAKTIEK LNRPTLIMEP NKTLAAQVAS EMKELFPNNA VVYFVSYYDY YQPEAYVPQS DTYIEKDASI NEEVEKLRHQ ATSSLLSRRD VIVVASVSCI YGIGSPQDYA GLAPNVDKSV PLERDDFIKD LINVQYDRND YDLQRGMFRV RGDVVDVFPP YAENPLRIEF FGDEVESISE VSTVTGEVLR EFDAIPIWPA SHYVTERPKI THALTTISEE MEARVKELKE NDKLLEAQRL AQRTNYDLEM LETMGYCNGI ENYSRHLDGR APGEPPYTLI DYFPKDMICI IDESHVTVPQ IRGMYEGDRS RKVTLVDHGF RLPSALDNRP LRFDEFEGRI PQFIYVSATP GDYEETVAQQ QVEQIIRPTG LLDPKIDVRP VRGQIDDLIS EVKERVAKKE RVLVTTLTKR MAEDLTDHLL DEGIKVNYMH SDTATLDRVE IIRDLRQGKI DVLVGINLLR EGLDIPEVSL VAILDADKEG FLRNRRSLIQ TMGRAARNAS GQVIMYADKI TDSMRIAIDE TKRRRELQEA FNKEHGIVPK TVKKSITDIA GFIAEASENI DKRKRKNGEF YTASNDEDSL EEQQESILEM PAELLTEELQ NLPRSEVEAM LSGMEAEMAE ASASMDYEHA AELRDQIVAI RSQLEGTTSD DVIKRLKTGA RKGSAHATRR RYRGKH
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