| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0889 |
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| Symbol | |
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| ID | 8413755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 994325 |
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| End bp | 994987 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 645022472 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
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| Protein accession | YP_003179909 |
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| Protein GI | 257784692 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000345367 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0902559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGATTTTCT CGACACTTGA AAATATTCTT GCAACAAATA TTGAAGCAGT AATTTTTGAT
TTTGATGGCA CTATTGCTCA TACACACCAT ATTTGGAAGC TTGTTGATCA AGAGTTTTTT
GAGTCACGAG GAATCCCTTA CACTCCTGAA ATTGGCAAGA TTCTCTCTCC TCTTGGATTT
GAAAAAGGTG CTGAGTGGGC AATTTCTACG TATAAATTAA ATGAGGATCC GAAAAAAATT
ATTACAGAGT GGAAAGAACT AGGTAAAAGT TTTTTTATAA ACTCAGTACA GCTCCGTCCT
GGTGTTGTTG AATTTATTAA CCAGCTAAAA GAGAGGCACA TTTCCACAGC ATTGGCAACC
GTTAACGAAC CAGAGCTTCT TGCTCTCCTT GAACCTCGCT TGCATCTATC TACTCTATTT
GATACTCAGG TATTTGCTGC TGATGTCGGA TCTGCAAAAG ATGAACCGTA TTTATATTTA
GAAGCTCTTG CGCGTCTTAA GGCTAAAGCC AAGAAAACAC TTCTGTTTGA AGACATTCCG
CTAGCCATTC AAACAGGTAA CTCTATTGAC CTTATTACCT GTGCTGTTAA TTGTGATGAT
GAACATCAAG ATATCGAGAA ACTCTCTAAG CTTGCTGACT TCACCATCAA ACACTGGTAT
TAA
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| Protein sequence | MIFSTLENIL ATNIEAVIFD FDGTIAHTHH IWKLVDQEFF ESRGIPYTPE IGKILSPLGF
EKGAEWAIST YKLNEDPKKI ITEWKELGKS FFINSVQLRP GVVEFINQLK ERHISTALAT
VNEPELLALL EPRLHLSTLF DTQVFAADVG SAKDEPYLYL EALARLKAKA KKTLLFEDIP
LAIQTGNSID LITCAVNCDD EHQDIEKLSK LADFTIKHWY
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