Gene Apar_0849 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0849 
Symbol 
ID8413715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp943255 
End bp944634 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content48% 
IMG OID645022432 
Productsignal recognition particle protein 
Protein accessionYP_003179869 
Protein GI257784652 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0541] Signal recognition particle GTPase 
TIGRFAM ID[TIGR00959] signal recognition particle protein 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.265552 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAACA GCCTTCAAGA TAGACTGCAA AATACATTTT CCGCTTTGCG CGGAAAGGGT 
CGTCTTACTG AGGACGACAT CAATTCCGCA ATGCGAGAAA TTCGCATGGC TCTTCTCGAG
GCTGACGTTA ACTACAAGGT AGTTAAAGAG TTTGTTGGCC GCTGTAAAGA GCAGTGCATG
ACTGCTGACG TACTGGAGTC CCTGTCTCCA GCTCAAAACG TTGTTCGCAT TGTTTTAGAT
GAGCTGACAG CACTGCTTGG TTCAACTGAA TCAAAGCTTA CGCTGGCACA GAACCGCATT
CCAAACGTCA TTATGCTTGT CGGTCTTCAG GGCTCTGGTA AGACAACCGC AGCTGCAAAG
CTTGCATACT TGCTTAAGTC CCAGGGAAAG AATCCTCTGC TTGCCGCTTG CGACGTTCAT
CGTCCTGCAG CAGCAGATCA GCTTGAAACA CTTGGCTCTG AGATTGGCGT GCCAGTCTAT
CGCGGCGACG GTAAAGACGC TGTTGCCATT GCATCTGAAG CTATCCAGGA GGCCGTTGAT
CATCTCAATG ACCTGGTAAT TGTTGATACT GCTGGTCGTC TTCAAATTGA TGAAGAAATG
ATGGAAGAAG CCGTTGCTAT CAAACGTGCC GTCAAACCAG ATCAGATTCT TATGGTTGTC
GATGCTATGA CCGGCCAGGA TATTGTTAAT GTTGTCAGCA CCTTCGCAGA ACGTGTGGAC
TTTGACGGCG TTATCATGTC CAAGCTTGAT GGTGATGCTC GTGGTGGTGG TGCACTTTCT
GTACGTGAGG TTACCGGTAA GCCTATCAAG TTTGTTTCCA TGGGCGAGAA ACCCGATTCA
CTTGAGGTTT TCCATCCAGA TCGTATGGCC AAGCGTATTC TTGGCATGGG TGATGTCATC
TCTATTGTTG AGCAGGCTCA AAAGGCGGCT GATGAGCAGC AGGTTGAAGA TGCCGAACGT
ATGTTGCGCG AGGGCTTTAC TATGGACGAC CTGCTCAATC AGATGAACCA AATTCGCAAG
ATGGGTGGTC TTGCAAAGCT TATTGGGGCA CTTCCTGGTG GAGACCGCAT GATGGCTCAG
CAGGGTGGTG TAGACGATAG TTCTATGGGA AAGATTGAAG CCATCATTCA TTCAATGACT
AAAGAAGAGC GCGCGCGTCC AAAGATTATT AATGGTCAGC GACGTCGTCG TATTTCTATG
GGTTCTGGTC GTAGCGTTCA AGAAGTTAAT CAGCTTATTC GTCAGTGGGG AGAGATGAAT
AAGATGATGG GTAAAATGAA GGCTATGACT CAGGGCGGTA ATGCAAAGAA GGGTCGTCGT
GCCATGGAGT CTATGATGAA GAATATGGGC TTTGGTGGAG GTCAAATGCC TCGCTTTTAA
 
Protein sequence
MFNSLQDRLQ NTFSALRGKG RLTEDDINSA MREIRMALLE ADVNYKVVKE FVGRCKEQCM 
TADVLESLSP AQNVVRIVLD ELTALLGSTE SKLTLAQNRI PNVIMLVGLQ GSGKTTAAAK
LAYLLKSQGK NPLLAACDVH RPAAADQLET LGSEIGVPVY RGDGKDAVAI ASEAIQEAVD
HLNDLVIVDT AGRLQIDEEM MEEAVAIKRA VKPDQILMVV DAMTGQDIVN VVSTFAERVD
FDGVIMSKLD GDARGGGALS VREVTGKPIK FVSMGEKPDS LEVFHPDRMA KRILGMGDVI
SIVEQAQKAA DEQQVEDAER MLREGFTMDD LLNQMNQIRK MGGLAKLIGA LPGGDRMMAQ
QGGVDDSSMG KIEAIIHSMT KEERARPKII NGQRRRRISM GSGRSVQEVN QLIRQWGEMN
KMMGKMKAMT QGGNAKKGRR AMESMMKNMG FGGGQMPRF