| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0713 |
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| Symbol | |
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| ID | 8413574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 791588 |
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| End bp | 792661 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022291 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_003179733 |
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| Protein GI | 257784516 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000179316 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGAGC TTGCTCGCAC AAAAACCCAT CCCGTAATGG TTGGCCCCGT TCAGGTTGGT
GGAGGTGCTC CCGTTTCTGT TCAGTCAATG TGTACTACCA AAACAGATGA TGCAGATGCA
ACGCTTCATC AGATCAAAAA GCTTGCAGAG GCTGGTTGTG AGATTATTCG TGTAGCAATT
CCTGACGCAA AAGCACTTAA TGGTTTTGAA GAAATCTGTA AATACTCGCC ACTGCCTGTT
GTTGCCGATA TCCACTTTGA CTATAAACTT GCGCTCGAGG CTGCAAAGAG AGGTGCAGCA
GCACTTCGTA TTAATCCAGG CAATATTGGT TCTATGGAGC GCGTTGACGC TGTTATTGAT
GCAGCTAAAG AAGCTCATAT TCCTATCAGA ATTGGCGTTA ATGCAGGGTC TCTTGCTAAG
GAATTTGATA CAAGACAAGA CATGACCCTT GTTGAGAAAC TTGTGGCATC GTCAAAGTCA
TTTGTAGAAC ACTTTTCTTC TCGTGGTTTT GACAATATTG TCTTGTCAGC AAAAGCACAC
GACGTTCCAA CTACGCTTGC TGTGTATCGA GCACTTTCCA AAGAGCTCCC ACAGATTCCT
CTGCACGTAG GTGTTACGGA GGCTGGCGCG TTGAGGCAGG GAACTGTAAA GAATTCTGCT
GCTGTTGGTA TTTTGCTAGA AAGTGGTATT GGCGATACTA TGCGTCTCTC TTTGACAGCT
GATCCGATAG AAGAAGTTCA TGTGGCGTGG GAACTTCTTG CAGCTCTTGG TATGCGTCGC
ATTAAACCAG AGCTTGTGAG CTGCCCTACA TGTGGCCGAT GTGGTGTTGA CATGATTCCT
ATTGCAGAAG AAGTTACTAA GCGCCTTGAT GGTGTTCGTG CTCCAATTTC TGTTGCTGTA
ATGGGATGCG TTGTTAATGG TCCTGGTGAA GCTAAGGGTG TTGACCTTGG CGTTGCCTGT
GGCAAAGGCC AGGCTGTTTT GTTCGAAAAC GGCAATCCTA TTAGAAAAGT TCCTGAAGAT
AAAATTGTTG ATGAGTTATT CACTGAAATT GAGAATCGTT TTGGCAAAAA ATAA
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| Protein sequence | MSELARTKTH PVMVGPVQVG GGAPVSVQSM CTTKTDDADA TLHQIKKLAE AGCEIIRVAI
PDAKALNGFE EICKYSPLPV VADIHFDYKL ALEAAKRGAA ALRINPGNIG SMERVDAVID
AAKEAHIPIR IGVNAGSLAK EFDTRQDMTL VEKLVASSKS FVEHFSSRGF DNIVLSAKAH
DVPTTLAVYR ALSKELPQIP LHVGVTEAGA LRQGTVKNSA AVGILLESGI GDTMRLSLTA
DPIEEVHVAW ELLAALGMRR IKPELVSCPT CGRCGVDMIP IAEEVTKRLD GVRAPISVAV
MGCVVNGPGE AKGVDLGVAC GKGQAVLFEN GNPIRKVPED KIVDELFTEI ENRFGKK
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