Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0605 |
Symbol | |
ID | 8413462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 674836 |
End bp | 675690 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 645022180 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_003179626 |
Protein GI | 257784409 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.159989 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGA TGTTGAAGCG GTGGTGGCCA TTATTTGTTC TGCCTACAGC GCTATCTTTT TTGTTTGGCT TTCTGATTCC GTTTGTACAG GGATTTTATC TTTCATTTTG TAAATTTATT ACCATTAGCG ATGCTAAACC AGTTGGTCTA GATAATTATG TGGCAGCTTT TTCTGATCCA CAGTTTGCCC ATGCTTTTTT GTATACCGCA TTATTTGCAC TAGTCTCAAC AGTTCTTATT AATGTGTTGG CGCTTGCAAT TGCACTTGCC TTAACTAGAA AGAATCTTAA GGGCACCAAT TCATTTAGGA CTGTCTTTTT TATGCCAAAC CTTATTGGCG GCATTGTCTT GGGTTATATC TGGAATATTT TGATTAACTG TATACTCTCT ATTGTAGGTG AGCAGCTTCT TGCACTTAAT AGTACTGCTG GATTCTGGGG AATGATTATT CTTACCCTGT GGCAGCAAGT TGGTTACATG ATGATTATTT ATATTGCTGG CTTGCAGTCT ATTCCAAGTG ATTATCTTGA AGCAGCACGA GTTGATGGAG CAAATGCTTG GCAGACGCTT TGGAAGGTAA AAATTCCAAA CCTTATGTCT ACCATTACTA TTTGTCTTTT TTTGACGGTA ACAAATGGCT TTAAATTATT TGATCAGAAC TTGGCGCTTA CTGCAGGTGA GCCTAAGCAT ACAACTGAAA TGCTTGCCCT TAATATTTAC AATACCTTCT ATGCTCGACA GGGAGCAAAG TGGATGGGTA TTGGTCAGGC TAAAGCTGTT ATTTTCTGCA TTTTAGTTAT TTGTATAGTC ATGATTCAGC TGAGAGCCAC CAGGTCAAAG GAGGTGCAGC AATAA
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Protein sequence | MAKMLKRWWP LFVLPTALSF LFGFLIPFVQ GFYLSFCKFI TISDAKPVGL DNYVAAFSDP QFAHAFLYTA LFALVSTVLI NVLALAIALA LTRKNLKGTN SFRTVFFMPN LIGGIVLGYI WNILINCILS IVGEQLLALN STAGFWGMII LTLWQQVGYM MIIYIAGLQS IPSDYLEAAR VDGANAWQTL WKVKIPNLMS TITICLFLTV TNGFKLFDQN LALTAGEPKH TTEMLALNIY NTFYARQGAK WMGIGQAKAV IFCILVICIV MIQLRATRSK EVQQ
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