Gene Apar_0551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0551 
Symbol 
ID8413405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp636290 
End bp636922 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content39% 
IMG OID645022124 
Producttranscriptional regulator, XRE family 
Protein accessionYP_003179573 
Protein GI257784356 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.401249 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000933135 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAATACC AAATTGCTGA AGCACGTAAG CTTAGAAATA TTACGCAAGC TGAATTAGCT 
GAGAAAATGG GAACCACTCA GCAGACAGTT CAAAGATATG AGACTAACCA AGTTAACATC
CGCATGGATA AGATGATTGA AATGTCCGAA ATCTTGAATG TGAGCCTGGC ATACCTTCTT
GGAATGTCTA GTAGTCCAGA GATATCAGAA GTTTCTGATA TGGCACCTGT TCCACTCTTA
GGCTCAATAG CTGCGGGCAC CCCTATTGAA ATGATTAGCG TTGATGAGAC TTATGACATC
CCAGCAGACA TTCATGAGAG ATATCCGCAA GCTTTTCTTT TAAAAGTTGT CGGTGAGTCC
ATGAACCGTG TTCTTCCTAA TGGTTGTTAT GCACTTATTA ACCCATGTAA AGAAGAAATT
AAGCCTATGA AGGCATATGC AGTGTGTGTG AATGGCTTTG ATGCAACTAT TAAACGAGTA
AAGCCTCTAT CGAATGGCTA TGAGCTAATC CCAGACAGCA TAGATCCTAC ATTTAGACCA
CAAATATTTG ACTTTAATGA GATTGACACG CAGCCAATTT CGATTATTGG TGAAGTTATT
TGGTATTTAG TTCCATTCGG ATTTGAAATC TAA
 
Protein sequence
MKYQIAEARK LRNITQAELA EKMGTTQQTV QRYETNQVNI RMDKMIEMSE ILNVSLAYLL 
GMSSSPEISE VSDMAPVPLL GSIAAGTPIE MISVDETYDI PADIHERYPQ AFLLKVVGES
MNRVLPNGCY ALINPCKEEI KPMKAYAVCV NGFDATIKRV KPLSNGYELI PDSIDPTFRP
QIFDFNEIDT QPISIIGEVI WYLVPFGFEI