| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0522 |
|---|
| Symbol | |
|---|
| ID | 8413374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 604917 |
|---|
| End bp | 605498 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022093 |
|---|
| Product | translation initiation factor IF-3 |
|---|
| Protein accession | YP_003179544 |
|---|
| Protein GI | 257784327 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0290] Translation initiation factor 3 (IF-3) |
|---|
| TIGRFAM ID | [TIGR00168] translation initiation factor IF-3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000692532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000579185 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTACAAGA TAGCCAAGAA CGATGGTCCT CGCATTAATG AGGAAATCAC TGCTCGCACG
TGCCGTCTTA TTGACGCTGA TGGTAGTCAG CTTGGTCTTT TTGGCGTCAA TGATGCAATG
AAGAGAGCTC GTGAGCATGG TCTTGATCTC GTAGAGATTG CTCCAAATGC CGAGCCTCCT
GTATGCAAGA TTCTTGATTA CAGTAAGTTC AAGTATGAGC AGGCTCGCAA AGCCAAGGCA
GCTCGTAAGA ACCAGGTCAA GATTGAAGTC AAAGAGATGA AGTTCCGCCC AAAGATTGAT
GTGGGCGATT ACGAGACCAA GAAGGGTCAC GTGCTTCGTT TTCTTAAGAA GGGAGCACGC
GTCAAGATTA CCATCATGTT CCGTGGACGC GAGATGGCTC ACCCAGAGCA GGGTCGTATT
GTACTTGATC GCCTTGCTGA AGATTTGAAG CCTTATGCCA CAATTGAGCA AAAACCGCTC
ATTGAAGGCC GTAACATGCA CATGCTCGTT GCTCCAATCA AGGGAGCGTT TGACGAGAAG
CCCGAGGGTG CTGAGGATAG CACCACACAG GAGGAGAAGT AG
|
|---|
| Protein sequence | MYKIAKNDGP RINEEITART CRLIDADGSQ LGLFGVNDAM KRAREHGLDL VEIAPNAEPP
VCKILDYSKF KYEQARKAKA ARKNQVKIEV KEMKFRPKID VGDYETKKGH VLRFLKKGAR
VKITIMFRGR EMAHPEQGRI VLDRLAEDLK PYATIEQKPL IEGRNMHMLV APIKGAFDEK
PEGAEDSTTQ EEK
|
|---|
| |