Gene Apar_0518 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0518 
Symbol 
ID8413369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp596630 
End bp597847 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content48% 
IMG OID645022088 
Productqueuine tRNA-ribosyltransferase 
Protein accessionYP_003179540 
Protein GI257784323 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00174358 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCAGACG GCTCCAAAAA AGCACAGGGT TTTACCACCA AAATTTCTTG CGTATATACA 
GAAAATTGGG CAGAGAAAAA AGAAGATTCT TGGTTTACTT ACGAACTTCT CGCTGAAGAT
CCTAAGACGC ATGCGCGCGC CGGTGTCTTC CACACACCTC ATGGTGATAT TCCAACGCCT
ATTTTTATGC CGGTAGGAAC TAAGGCAACT GTTAAAGGTT TGATGACTGA TACCGTCCGT
GACCTTGGCG CTAAGATTAT TCTGGCAAAT ACGTATCATC TGTCTCAGCG CCCGGGTGAT
GAGCTGGTGG CGCAGATGGG CGGCTTGCAT GACTTTATGC AGTGGCATGG TCCTATCTTG
ACGGATTCTG GCGGATTCCA GGTCTTTAGT CACGAAGAGT TCATGAAGCT CTCTGATGAG
GGCGTTAAAT TTCGTGCAGT TGATTATGAC GGCGCATGGT CGTATTGGAC TCCAGAAACT
AACATGCAGA TTGCCCAGAA CCTTGGTGCA GACATTGTTA TGCAGCTAGA TCAGTGCGTA
GGTTATCCTG CAGAGCGTAA AAAAGTTGAG CGCGGTGTTG AGCTTTCAAG TGCATGGGCC
GAGAGGTGCT TCAAGGCTCA TACCCGTCCT GATCAGGCGC TCTTCGGTAT CGTTCAAGGT
GGCATGCATC TTGATTTGCG CAAGCGCTCA ATTGAGCACC TTGAGTCTAT TGGTGATTTC
CCTGGTTATG GCATTGGTGG TTATTCTGTT GGTGAGCCTC ATGAGCTTAT GTTTGAGACA
CTAGCTCCAC TGTGCGCAGA TTACATGCCT CGCAATAAGC CCCGTTATCT GATGGGCGTT
GGTAATCCGT CTACGCTTAT TCGCGGCGTT GCTTGCGGCA TTGATATGTT TGACTGCGTA
CTTCCAACGC GCACCGCCCG TATGGGTACC GCGTTTTCCC ATGAGGGCCG TATGAACCTC
AAGAACGCTA AGTACTTTGC TGATGCAGGT CCTATTGACG TTAAGTGCAC CTGTCCTGTT
TGTACGGGCG GTTATTCTCG TGCGTATATC AATCACCTGG TCAAACAGCA TGAGATGTTA
GGTGGACAGC TGCTCTCTAT GCATAATATT TACTTCCTGC TTGAGCTAAT GCGTCAGGCA
CGAGAAGCAA TTCTCGCAGG TACTTATAGC GACTTTGTTG AGGAATGGGA AAATTCGGAA
GGTGTGGTTG ATTTTTAA
 
Protein sequence
MPDGSKKAQG FTTKISCVYT ENWAEKKEDS WFTYELLAED PKTHARAGVF HTPHGDIPTP 
IFMPVGTKAT VKGLMTDTVR DLGAKIILAN TYHLSQRPGD ELVAQMGGLH DFMQWHGPIL
TDSGGFQVFS HEEFMKLSDE GVKFRAVDYD GAWSYWTPET NMQIAQNLGA DIVMQLDQCV
GYPAERKKVE RGVELSSAWA ERCFKAHTRP DQALFGIVQG GMHLDLRKRS IEHLESIGDF
PGYGIGGYSV GEPHELMFET LAPLCADYMP RNKPRYLMGV GNPSTLIRGV ACGIDMFDCV
LPTRTARMGT AFSHEGRMNL KNAKYFADAG PIDVKCTCPV CTGGYSRAYI NHLVKQHEML
GGQLLSMHNI YFLLELMRQA REAILAGTYS DFVEEWENSE GVVDF