Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0518 |
Symbol | |
ID | 8413369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 596630 |
End bp | 597847 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 645022088 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_003179540 |
Protein GI | 257784323 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00174358 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCAGACG GCTCCAAAAA AGCACAGGGT TTTACCACCA AAATTTCTTG CGTATATACA GAAAATTGGG CAGAGAAAAA AGAAGATTCT TGGTTTACTT ACGAACTTCT CGCTGAAGAT CCTAAGACGC ATGCGCGCGC CGGTGTCTTC CACACACCTC ATGGTGATAT TCCAACGCCT ATTTTTATGC CGGTAGGAAC TAAGGCAACT GTTAAAGGTT TGATGACTGA TACCGTCCGT GACCTTGGCG CTAAGATTAT TCTGGCAAAT ACGTATCATC TGTCTCAGCG CCCGGGTGAT GAGCTGGTGG CGCAGATGGG CGGCTTGCAT GACTTTATGC AGTGGCATGG TCCTATCTTG ACGGATTCTG GCGGATTCCA GGTCTTTAGT CACGAAGAGT TCATGAAGCT CTCTGATGAG GGCGTTAAAT TTCGTGCAGT TGATTATGAC GGCGCATGGT CGTATTGGAC TCCAGAAACT AACATGCAGA TTGCCCAGAA CCTTGGTGCA GACATTGTTA TGCAGCTAGA TCAGTGCGTA GGTTATCCTG CAGAGCGTAA AAAAGTTGAG CGCGGTGTTG AGCTTTCAAG TGCATGGGCC GAGAGGTGCT TCAAGGCTCA TACCCGTCCT GATCAGGCGC TCTTCGGTAT CGTTCAAGGT GGCATGCATC TTGATTTGCG CAAGCGCTCA ATTGAGCACC TTGAGTCTAT TGGTGATTTC CCTGGTTATG GCATTGGTGG TTATTCTGTT GGTGAGCCTC ATGAGCTTAT GTTTGAGACA CTAGCTCCAC TGTGCGCAGA TTACATGCCT CGCAATAAGC CCCGTTATCT GATGGGCGTT GGTAATCCGT CTACGCTTAT TCGCGGCGTT GCTTGCGGCA TTGATATGTT TGACTGCGTA CTTCCAACGC GCACCGCCCG TATGGGTACC GCGTTTTCCC ATGAGGGCCG TATGAACCTC AAGAACGCTA AGTACTTTGC TGATGCAGGT CCTATTGACG TTAAGTGCAC CTGTCCTGTT TGTACGGGCG GTTATTCTCG TGCGTATATC AATCACCTGG TCAAACAGCA TGAGATGTTA GGTGGACAGC TGCTCTCTAT GCATAATATT TACTTCCTGC TTGAGCTAAT GCGTCAGGCA CGAGAAGCAA TTCTCGCAGG TACTTATAGC GACTTTGTTG AGGAATGGGA AAATTCGGAA GGTGTGGTTG ATTTTTAA
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Protein sequence | MPDGSKKAQG FTTKISCVYT ENWAEKKEDS WFTYELLAED PKTHARAGVF HTPHGDIPTP IFMPVGTKAT VKGLMTDTVR DLGAKIILAN TYHLSQRPGD ELVAQMGGLH DFMQWHGPIL TDSGGFQVFS HEEFMKLSDE GVKFRAVDYD GAWSYWTPET NMQIAQNLGA DIVMQLDQCV GYPAERKKVE RGVELSSAWA ERCFKAHTRP DQALFGIVQG GMHLDLRKRS IEHLESIGDF PGYGIGGYSV GEPHELMFET LAPLCADYMP RNKPRYLMGV GNPSTLIRGV ACGIDMFDCV LPTRTARMGT AFSHEGRMNL KNAKYFADAG PIDVKCTCPV CTGGYSRAYI NHLVKQHEML GGQLLSMHNI YFLLELMRQA REAILAGTYS DFVEEWENSE GVVDF
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