| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0517 |
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| Symbol | |
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| ID | 8413368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 595918 |
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| End bp | 596619 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645022087 |
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| Product | Tetrahydrodipicolinate succinyltransferase domain protein |
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| Protein accession | YP_003179539 |
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| Protein GI | 257784322 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
[TIGR03532] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00414569 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGCCC AGGAAATTAT CAATTACATT GCCACTTCTG AGAAGAAAAC TCCCGTTAAG
CTGTATGTTA AAGAGCGTGA GGATGCTTCT GTGTCTTATG GATCTTCTCG CGTTTATGGC
GAGGGCACTT CAAAGGTTGT CTTTGGCGAC TGGTCTGAGC TCAAGAGCGT TGTTGAGCAA
AACGCAGACG CATTTGAGTA TTTTGACATC GAGAATGACC GTCGAAACTC CAGCGTTCCC
CTGCTTAATA TGAAAGATGT AAATGCTCGT ATTGAACCAG GTGCGTTGAT TCGTGAGCGT
GTTGAGATTG GCGATAATGC TGTCATTATG ATGGGTGCCG TTATTAACAT CGGCGCTGTA
ATTGGCGAAG GCACCATGAT TGACATGGGT GCTGTTCTAG GTGGTCGTGC AACTGTTGGT
AAGAACTGTC ACATTGGCGC TGGTACCGTT CTTGCGGGTG TTGTTGAGCC TGCTTCTGCT
ACTCCAGTTA TTGTTGAGGA TAACGTTCTA ATTGGCGCAA ACGCTGTGGT TATTGAGGGT
ATTCGTGTTG GAGAGGGTGC TGTTGTAGCA GCAGGCGCCG TGGTAGTTGA GGACGTTCCA
GCAAACGCCG TGGTAGCAGG ATGCCCTGCA CGTGTGATAA AAATGAAGGA TCAGAAAACA
GAGGGCAAGA CAGCACTGGT CGATGCTCTT CGTACGTTGT AA
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| Protein sequence | MDAQEIINYI ATSEKKTPVK LYVKEREDAS VSYGSSRVYG EGTSKVVFGD WSELKSVVEQ
NADAFEYFDI ENDRRNSSVP LLNMKDVNAR IEPGALIRER VEIGDNAVIM MGAVINIGAV
IGEGTMIDMG AVLGGRATVG KNCHIGAGTV LAGVVEPASA TPVIVEDNVL IGANAVVIEG
IRVGEGAVVA AGAVVVEDVP ANAVVAGCPA RVIKMKDQKT EGKTALVDAL RTL
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