| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0496 |
|---|
| Symbol | |
|---|
| ID | 8413345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 565311 |
|---|
| End bp | 566720 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 645022064 |
|---|
| Product | radical SAM family protein |
|---|
| Protein accession | YP_003179518 |
|---|
| Protein GI | 257784301 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4277] Predicted DNA-binding protein with the Helix-hairpin-helix motif |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACTC TTGATAAACT CACCATACTT GCAGATGCGG CCAAATTTGA CGCGGCATGT
ACCTCCTCTG GTGTAGACAG AGATCCGCAG GCAGGAAAGA TAGGCATGGC TTCGACGGCG
GGTTGTTGCC ATTCATTTAC TCCTGACGGC CGCTGCATTA CGCTGCTAAA AGTTTTGCTT
TCTAATGCTT GTTGCTATGA CTGCGCTTAC TGCGTCAATA GATCGTCTGC TCAAACTAAA
CGTGCTACCT TTACACCACA AGAGTTAGCA GAACTTACCG TAGATTTCTA TAAAAGAAAC
TACATAGAAG GACTTTTTCT TTCCTCAGGT GTTATAGGGT CGCCGGATCA CACCACGGAA
CTCATGATTG AATGTCTCTC CTACCTTAGA AATGAACTGC TATTCAACGG CTATATTCAT
GCGAAGGTAA TTCCCGGAAC AGACTCAGAT CTTATTGACG CTATTGGCCG TTTGGCAGAC
AGACTCTCCG TCAACCTGGA ATTACCTAGC TCAACCTCAC TTACTAAACT TTGCCCGCAC
AAAAATGCTG AAACGGTTAC TAAACCCATG TCTTTTATTC ACCACCTACG CGTCTCTGAA
GAAAGACAAT TACTCGAAGC TAAAAATACG TCAAAGAGTA TTGTGAAGTC TGCTGGCAAA
TCTAAAGGTA TTATTATTCC AAGTCAGAAG CAGATTATAA AAGAAGGTTT AGCCTTACGT
TCTAATTGTT TGAAGAACAC TTTTATGCAT TCATCAAGGG TGTCTTCGAG TAAAAGGTCT
TTCTCGCCTG CTGGGCAGTC AACACAAATT ATTATTGGGG CTTCTCCAGA GTCAGATAAT
CAAATATTGC ATTTATCACA AGCGCTTTAC CAACAATTTG AGTTAAAACG AGTATTTTTT
TCTGCCTATA TTCCTGTTAT GGAAGATGAT CGTCTTCCTG AGTTAGATAC CCCTGTTCCC
CTCCGTAGAG AGCATCGCCT TTACCAAGCT GATTGGCTTA TGCGCTACTA TGCATTTTCT
CCTGATGAAC TTGTTTCTCC AGAAGCGCCT TGGCTTGATT TAGAAGTTGA CCCAAAGCTT
GGATGGGCAT TGGCTCATCT TGATCAATTT CCTATAGAAA TTATGGATGC ACCACTAGAA
ATACTTTTAC GAGTGCCCGG AATTGGCCCT ACCGGTGCAC GAAGAATCAT TGCCGCAAGA
AGACGATCTC GTCTTACTTT TGATGATCTT AAACGGCTGG GAATACAGCT CAAACGATCC
CATCACTTTC TCACCTGCTG CGGAGTAAGA GATGCTACAG CCCCACTTGA CCAAGAACTA
ATTAAACAGA GAGTAATTGC TGATGCTAAA GCAAGTTCAT ACAACAAAAC AAGACGTCGC
ATTGAATCCT CTCAACTCAG ACTCTTCTAA
|
|---|
| Protein sequence | MDTLDKLTIL ADAAKFDAAC TSSGVDRDPQ AGKIGMASTA GCCHSFTPDG RCITLLKVLL
SNACCYDCAY CVNRSSAQTK RATFTPQELA ELTVDFYKRN YIEGLFLSSG VIGSPDHTTE
LMIECLSYLR NELLFNGYIH AKVIPGTDSD LIDAIGRLAD RLSVNLELPS STSLTKLCPH
KNAETVTKPM SFIHHLRVSE ERQLLEAKNT SKSIVKSAGK SKGIIIPSQK QIIKEGLALR
SNCLKNTFMH SSRVSSSKRS FSPAGQSTQI IIGASPESDN QILHLSQALY QQFELKRVFF
SAYIPVMEDD RLPELDTPVP LRREHRLYQA DWLMRYYAFS PDELVSPEAP WLDLEVDPKL
GWALAHLDQF PIEIMDAPLE ILLRVPGIGP TGARRIIAAR RRSRLTFDDL KRLGIQLKRS
HHFLTCCGVR DATAPLDQEL IKQRVIADAK ASSYNKTRRR IESSQLRLF
|
|---|
| |