Gene Apar_0353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0353 
Symbol 
ID8413202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp404831 
End bp406717 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content52% 
IMG OID645021921 
ProductABC transporter related 
Protein accessionYP_003179375 
Protein GI257784158 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID[TIGR01166] cobalt transport protein ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTAATC TGCTCGACAA CTCCCCAGAT ACACACACGT CTGAAAGCGC CGCACAAGTT 
CAGGACCTCC CTGTAGCTGC AACGCTTTCG GACGTGACCT TTGTGCACGC AAAGGGCGTA
GTTGCCTTAG ATCATGTCTC GTTCTCTATT CCCGCGGGTA AACGTACCTG TATTGTTGGT
GCAAATGGTT CAGGCAAGTC AACTGTTGCC TCGATTCTCT CTGGCCTTAC CGCTCCCGAT
GAAGGAACTG TTACCTTTTT GGGAACAACC GTTGTTAACG ATGGCCAGGT TGACTTTGAG
TCGTACAAAA CCATTCGTCC ACAGCTTGGT TTGGTCTTCC AAAATCCTGA GGATCAGATT
ATTTGCAGCG TGGTCGCAGA CGATATTGCT TTTGGTCTGG AAAACCTTCA GGTTCCCAGT
GGCCACATAA CGCAACTGGT AGAAGAGCAG ATTAAGCTTG GTTCTCTTAC CAAATTTTCG
TCTGAAAATC CGCAAAAGCT CTCGGGTGGC CAGCAACAGC GTGTAGCCAT CTCGGGTACG
CTGGTCATGA AACCCCAGAT TCTAATTCTT GATGAACCTT CCGCAGCTCT TGACGTTGTT
CATAGAAATA ATGTCATGGG TCTTGTCAAG AAACTTCGTG CAGCTGGAAA GACTATCGTT
CATATAACGC ATTTCATGGA CGAAGTGGTT TCTGCTGATC ACGTTATTGC CTTGGACGAC
GGCCGCATTG CGTTTGAGGG AACACCCGAA GCCCTCTTTG ACCAGCACGA ACTAGTTGAA
TGTCTACATC TTGAAGAACC GTTTGCCTAT CAGGTTGCTC ACGCGCTCAA CAACCGCGGA
GTTGTCGTGT GCAAATCCCC TTCGGCTGAG CGTGTTCTCA ACGAGCTGAC AGGGCTTCTC
GCCACGGCGA CGCAGGGCGG AGATATGGCT GAGAACTGCA ACGGCGCGGC TGCAGGTTGC
AACACGAACA ACGGCATCAC TGCGACTGAT AGCGCATCCG AGCCAGCGGC GGTTTCCGTG
CGGAACGTGA CGTTCTCGTA CCAGAAACCT GTGCTCAAAA ACATCTCGGT TGACGTGCAA
AAAGGCTCGC ATGTTGCTGT TATCGGCTCC ACTGGTTCCG GCAAGTCTAC CCTGGCGCGT
TTGATTTGCG CACTTGATAC ACCTGACACC GGCAGCCTTT GCGTAACTGG TTTGGATACT
CGACAGAAGC AAAATCGCAG AAAACTCCAC GGCATTGTTG GTTACGTCAT GCAGCGACCA
GAACGCCAGC TTTTCGCGCA AACGGTCGCC GAAGACGTTG CGTTTGGCCC CACTAACCTG
GGCTTTTCTG CCTGCGATGT AACAAGCGCT GTGAATGCTG CTCTGGAACT TGTCGGACTT
TCCCGCAAGG CAGACGCATC CCCTTTTGAG CTTTCTGGTG GTCAGCAAAG ACTTTGCGCA
CTTGCGGGCG TTATTGCCAT GCAGCCACAG GTGCTTGTAC TCGATGAGCC TACCAACGGA
CTTGATCCCT ACTATCGCTC TAAGCTCAGA AAAATTATTA ACGCTGTTCT TAAGGATGGC
TGCACTGTTA TTGAATTGAC ACACTCGATG GAGGATGCGG CAGAAACTGA CCAGATTATC
GTGCTCCATG AGGGTGACCT GATTTTTTCT GGCTCACCGC AACAAACATT TACTCATTTC
TCAGAGGCAG AATTCCAGAA GCTTGGACTG GGCATTCCTC ATGCACTTGC GTGGGCACAA
CGTCTGTCAC GAGCTACGGG AATCAACCTG GGGGAACCTT TGACCCTATC TGAGCTGGCA
GATTCGCTGT TGGATGTGGT GATGACCACC CCTGGTGCCG CACAGGTCAG CGACCTCACA
CAAGGAGGTC AGAATCATGG CGCTTAA
 
Protein sequence
MSNLLDNSPD THTSESAAQV QDLPVAATLS DVTFVHAKGV VALDHVSFSI PAGKRTCIVG 
ANGSGKSTVA SILSGLTAPD EGTVTFLGTT VVNDGQVDFE SYKTIRPQLG LVFQNPEDQI
ICSVVADDIA FGLENLQVPS GHITQLVEEQ IKLGSLTKFS SENPQKLSGG QQQRVAISGT
LVMKPQILIL DEPSAALDVV HRNNVMGLVK KLRAAGKTIV HITHFMDEVV SADHVIALDD
GRIAFEGTPE ALFDQHELVE CLHLEEPFAY QVAHALNNRG VVVCKSPSAE RVLNELTGLL
ATATQGGDMA ENCNGAAAGC NTNNGITATD SASEPAAVSV RNVTFSYQKP VLKNISVDVQ
KGSHVAVIGS TGSGKSTLAR LICALDTPDT GSLCVTGLDT RQKQNRRKLH GIVGYVMQRP
ERQLFAQTVA EDVAFGPTNL GFSACDVTSA VNAALELVGL SRKADASPFE LSGGQQRLCA
LAGVIAMQPQ VLVLDEPTNG LDPYYRSKLR KIINAVLKDG CTVIELTHSM EDAAETDQII
VLHEGDLIFS GSPQQTFTHF SEAEFQKLGL GIPHALAWAQ RLSRATGINL GEPLTLSELA
DSLLDVVMTT PGAAQVSDLT QGGQNHGA