| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0319 |
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| Symbol | |
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| ID | 8413167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 365595 |
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| End bp | 366596 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645021886 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_003179341 |
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| Protein GI | 257784124 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0126271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACAA AAGTTGCTGT CATTATGGGT GGAGCCTCAT TTGAGAGGAA CTTCTCGCTA
AAAAGTGGGG CTCTTGTCTC CGAGGCTTTA GAGAAGTGCG GTTATGAGGT TTTGCCACTT
GATGCTGATG CTCATCTGGT TGATACCCTT CGTGCCGAGA AGCCCGATGT TGCCTTTGTG
TGCCTTCATG GTGCAGGTGG AGAAGATGGT GCGGTACCTG CACTTTTGGA GTTTCTCAAG
ATTCCGTATG TGGGCTCGAG GCCAGCGTCG TGTAGGGCTG CGTGGAATAA AGCAGACATG
CCATTTATTG TGCGTCAAGC CTGGTCAAAG GAGGAATCCG AGGTCATTTG GCCCCCTCAG
ATTGTGTTGA CCGCCAGTGC ATTCAAAGAC CTTGGGGCAG CAGCTGCTCT GGACATGGTC
CCCGAGCGTC TTGGTGGTGG AGTTGGTTTC CCCTTAGCGG TCAAGCCAGT TCATGGTGGT
TCTGCTATGG GTCTTTCTAA GGTTGATAGC GCCGACCAGC TTGGTAAGGC GCTTCTCGGC
GCACTTGGCT TTGATGATTC CGTCATTATT CAGCAGTGGG TTGATGGCGT TGAAGTAAGC
GTTACCGTGC TCTCTGATGC AGATGGCGAG AAAACCCTGC CACCTGTAGA GATTTCGGTG
ATTAAAGGCA TTTACGACAC GGACGCTCGT CTTGATCCAG AGCGCATTGA GCATTTCTGT
CCAGTTCGTT CTGAGTCTCT GGCGGCTCTT GGCGCAGATC CAGTTGCTGC TCGTGAGGCT
CTTGAGCGTG CGGCTCTTGA GGTATTTACC GCGTACGGCT GCAGAGATCT TGCTCGTATT
GACTTTATTT GGGATGGACA TCACGTTATG GTCATGGGTT TGAAGACATT CCCAGGACTT
ACTGAGACCT CCCTTGTTCC AATGGCAATT GAGGCTGCAG GATATGCTGT TGAAGACGTT
CTTGCACAGC TTGTTGAGGG CGCGCTTAAG CGCGGTAACT AG
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| Protein sequence | MATKVAVIMG GASFERNFSL KSGALVSEAL EKCGYEVLPL DADAHLVDTL RAEKPDVAFV
CLHGAGGEDG AVPALLEFLK IPYVGSRPAS CRAAWNKADM PFIVRQAWSK EESEVIWPPQ
IVLTASAFKD LGAAAALDMV PERLGGGVGF PLAVKPVHGG SAMGLSKVDS ADQLGKALLG
ALGFDDSVII QQWVDGVEVS VTVLSDADGE KTLPPVEISV IKGIYDTDAR LDPERIEHFC
PVRSESLAAL GADPVAAREA LERAALEVFT AYGCRDLARI DFIWDGHHVM VMGLKTFPGL
TETSLVPMAI EAAGYAVEDV LAQLVEGALK RGN
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