Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0282 |
Symbol | |
ID | 8413130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 322719 |
End bp | 323759 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 645021849 |
Product | periplasmic solute binding protein |
Protein accession | YP_003179304 |
Protein GI | 257784087 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000440667 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACATC ACTGCACACA TCACTCAACA GCTGCAAATC TGCGCCCGCA TACAAACCTG CAGCCACACG CTCACCGTAA CCCTCTCCTA ACCCGCAGAT CAGCGTTGTC TCTAATCGTC GCAAGTTCCA CAATTGCCAT CGCTTCGCTC TCTGCTTGCG GGCAACGCAA TTCTGCAACC AATTCAGGCT CTACATCAAA CCAGAACTCA TCGGCTCCCC TTGTCTTGAC TACCTTCACC GTCATCCAAG ACATGGCTTC TCGCGTAGCA GGCGAGTTCT GCCAGGTAGA ATCCATCACA AAGGCTGGCG CTGAAATTCA TGACTACGAG CCCACTCCCG ACGACCTCAA GCGAGCGCAG AAAGCCCAGC TTATCCTCAA CAATGGCTTG GGGCTTGAGC GTTGGTTTGA GCGCTTTGTC GACGAATCAC CTGCCCAACG TGCTGACCTC AGTGAGGGTA TTACCGCGAT TCCTATTGCC GAGGGCGATT TCCAGGGTCA GGCCAATCCA CATGCGTGGA TGTCGCCTGA AAACGGCAAG ATCTATGTCG AGAATATCGT CCGCGCGCTA AGCAGCCTTG TTCCTGACCA TGCCAAGGAC TTTGAAGCCA ACGGCAACGC ATACAAAAAA GAACTCGACA GCATCTCTTC TCGACTAATC GAAGAGCTCA GTGCCCTACC GGAAAACCAG CGCACGCTTG TGACTTGCGA GGGTGCGTTC TCATATCTAT GTCGCGACAC CACCATGAAG GAGCTCTACC TCTGGGCAGT TAACGCCGCT GATGAAGGTA CTCCACAGCA GATTGCCAAG GTCGTTGAAG CTGTAAAATC ACAGCAAATT CCTGCGGTAT TCTGTGAATC CACGGTAAAC CCCAAGGCAA TGCAGCAGGT AGCTGACGAG ACAGGCGCAA CCCTCAAAAC TGACGAGAAA AACATCTTGT ACGTTGACTC TCTTTCGGAA GCCGGCGGTC CCGTTCCCAC TTATCTTGAT CTGCTTCAAC ACGATGCAGA CGCAATCGTA TCTGGCCTCA TGGGAAGGTA A
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Protein sequence | MKHHCTHHST AANLRPHTNL QPHAHRNPLL TRRSALSLIV ASSTIAIASL SACGQRNSAT NSGSTSNQNS SAPLVLTTFT VIQDMASRVA GEFCQVESIT KAGAEIHDYE PTPDDLKRAQ KAQLILNNGL GLERWFERFV DESPAQRADL SEGITAIPIA EGDFQGQANP HAWMSPENGK IYVENIVRAL SSLVPDHAKD FEANGNAYKK ELDSISSRLI EELSALPENQ RTLVTCEGAF SYLCRDTTMK ELYLWAVNAA DEGTPQQIAK VVEAVKSQQI PAVFCESTVN PKAMQQVADE TGATLKTDEK NILYVDSLSE AGGPVPTYLD LLQHDADAIV SGLMGR
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