| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0188 |
|---|
| Symbol | |
|---|
| ID | 8413036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 221587 |
|---|
| End bp | 223113 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 645021760 |
|---|
| Product | LPXTG-motif cell wall anchor domain protein |
|---|
| Protein accession | YP_003179215 |
|---|
| Protein GI | 257783998 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4932] Predicted outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0846582 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC GACTGTTAAA GCTTTTTAGT TTTGTCCTCG TTCTTGCTCT ATCGCTTCCT
CTTGCAGTGA AATTAGCTTT TGCTGAGCCC ACAAGCGTTG AAGGCGCAAC GGGCGCCCCT
AAGGCGGTTG TTGCAACCAT TACAGACTTT AGAATTGAAG ACCGTTTTGG TAACCCAACC
ACTGTTGTCA ACAAGGCAAA TCTTTATGCC ATTGCAATGA ACTGGGACGC CTCTGCTAAT
GCTCATGTTG AGCCTGGTGA CTACTTTGAC GTCACCCTTC CTGACACTAT GAGGTTTACT
GCGGCTCATC CTGCATCTAC CTTCAACATC ACTGATGCAG CAACTGGTGA GGTTATGGCA
GTTGCTCACG TCAGCCCAGG TGCTGATGGT TTTGGCGGAA CCATGCGTGT TGTCTTTACC
GACTACGTTA ACAATCACAC TGACCTGCGT GGTAGTGTCC GTCTTGGCTT TACCATTAAT
TCAGAACGTA TTCAAACAGG TACCGGCAAG ACCTTTAACT TTACTGTTTC TGGCAACATT
GTTCCTGTAA CGTTTGACGT CACCGCTCTT GGCGTTATTG ATACCGAGTA TCTCTATAAG
TGGGGAAAGG TTATCGAAGG CAACGCAAAC GAGATTCAGT GGACTGGTCG TATCAACTTC
TCCCGCGGTA ACTTCAACAA TGTCCACCTT CACGATCAGC TCCTTGACTG GGGTGGCGGA
GACCTTCCTG CAGAGATTAC CTACGTTCCA GGCTCTTTTG AACTTTGGAC TGGTGTCTTT
GATGAGTACG GTTCAACCAT TCCAGGTACC GCTCACCGTG TTCCAATTAC CGACGACATG
ATTACCATTT CTCCTGATGG TAAGTCGTTT GATCTTGATC TTTCCGGCGT AGACTTCAGT
AATGGTCAGA GCTATAAGTT TATGTATCGA ACCACCTACG TTCCTGGCGT TGCCCTGCGT
AACCTCATCA AGATGTATTC CGATAAACCT GAGTACAGCT CTGACTGGGT CTGGCGTAAT
GCAACTTCCA GTGGAGAAGG TACTTCTACT ATCGTCGCTC GCATCCGCGT CATTAAGGTT
GATAAGGATG ACCACAACAC CAAGCTTGCG GGCGCTGTTT TTAAGGTAAC CAGCGTTGCT
GATCCAACCA AGACCTGGAC TATCACCACA GGTGAGGACG GCACTGCTAC TACCGAAAAG
CTTCCTGCAG GCACTTACAC TGTTCAAGAG ATTACCGCTC CTAACGGTTA CGAACTTAGT
ACTGATACCT ACAACTTAAC CGTCTCTGCA ACAAGCGGCG TTATCAAGAC TGTTGAGAAC
GAGAAAACCC CAACCGTTCC ACCAACCACC CCGCCGAACA CTCCACCTGC AGCTCCTCCA
TCAGAGACTC CAAAGAAACC TAAAAAGAAG CAATCTAAGC TTCCAGAGAC TGGCGAAGTT
TCCGAGATTG CTCTTGTTGC AGTAGCTACT GTTGGTAGCG TTGCTTCAAC TCTTGGCTAT
GCTCTAAAGA ATCGTCACCG TAAGTAA
|
|---|
| Protein sequence | MNKRLLKLFS FVLVLALSLP LAVKLAFAEP TSVEGATGAP KAVVATITDF RIEDRFGNPT
TVVNKANLYA IAMNWDASAN AHVEPGDYFD VTLPDTMRFT AAHPASTFNI TDAATGEVMA
VAHVSPGADG FGGTMRVVFT DYVNNHTDLR GSVRLGFTIN SERIQTGTGK TFNFTVSGNI
VPVTFDVTAL GVIDTEYLYK WGKVIEGNAN EIQWTGRINF SRGNFNNVHL HDQLLDWGGG
DLPAEITYVP GSFELWTGVF DEYGSTIPGT AHRVPITDDM ITISPDGKSF DLDLSGVDFS
NGQSYKFMYR TTYVPGVALR NLIKMYSDKP EYSSDWVWRN ATSSGEGTST IVARIRVIKV
DKDDHNTKLA GAVFKVTSVA DPTKTWTITT GEDGTATTEK LPAGTYTVQE ITAPNGYELS
TDTYNLTVSA TSGVIKTVEN EKTPTVPPTT PPNTPPAAPP SETPKKPKKK QSKLPETGEV
SEIALVAVAT VGSVASTLGY ALKNRHRK
|
|---|
| |