| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0105 |
|---|
| Symbol | |
|---|
| ID | 8412948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 118615 |
|---|
| End bp | 119457 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645021672 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_003179132 |
|---|
| Protein GI | 257783915 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.590593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCCA CGTTTCACTT ACATATTCTT GCCAGTGGAT CAAAGGGCAA CTGTACCCTA
CTAGAAACGC CTGATGGTCT TATTATGATT GATTGTGGAA TCTCAAGAAA AGAGATTCTA
CGTCGATCTA AAGAGCTAAA CGTTAATCTC TCTACGATCG TGGCCATCTT TATTACGCAC
GAGCATACTG ACCACGTCGT GGGTCTTCCG GTAGTCAGTA AAACTTTTGA TGTTCCGGTA
TTTGCTACAA CGGGAACTGC CGCTGCGCTT ACAGGGAGAA AGTCTTGCCA GAACGTCACG
TTTACCCTTA TTGACCAGGC AGGTTCTGTC CATATTGATG CCGCACCAGA CATTGAAATA
AATACGTTTC CAACGTCGCA CGATGTTTGT GAGCCTATGG GCATGCGCTT TGATTTTCTC
GCTGGTCCCG ATAGGCGCAT TGTGGACTCT GTGGGTTACT GCACCGATAC GGGCATCCTT
ACGCCAGAGG CTCTCGAGTG TCTCTCTGAC GTGCGTATTC TTGCTATTGA GTCCAATCAT
AACGAGCATA TGCTGCTCAC GGGCCCTTAT CCGTATATGC TCAAACAGCG TGTCCATGGA
GACTCCGGCC ACATATCAAA CGAGTACACC GCACAGGCAT TATCGCAGCT TGTAGGTCCA
AATACACGTT GCGTTGTTGG TATGCATCTC TCTCACGAGA ATAACCGTCC AAGTGTCGCC
GTTAAAACGC TTGCTGAGGC GATTGGTGCA AAGCCGCTTA ACGAAGCGTT CACTGAGGCG
CAAACTCCTG ACGGCTCTCT TACCGTCTGT GTAGCCAGCC AAGATTGGCC AATGTCACTC
TAA
|
|---|
| Protein sequence | MNPTFHLHIL ASGSKGNCTL LETPDGLIMI DCGISRKEIL RRSKELNVNL STIVAIFITH
EHTDHVVGLP VVSKTFDVPV FATTGTAAAL TGRKSCQNVT FTLIDQAGSV HIDAAPDIEI
NTFPTSHDVC EPMGMRFDFL AGPDRRIVDS VGYCTDTGIL TPEALECLSD VRILAIESNH
NEHMLLTGPY PYMLKQRVHG DSGHISNEYT AQALSQLVGP NTRCVVGMHL SHENNRPSVA
VKTLAEAIGA KPLNEAFTEA QTPDGSLTVC VASQDWPMSL
|
|---|
| |