| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0075 |
|---|
| Symbol | |
|---|
| ID | 8412918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 85209 |
|---|
| End bp | 86192 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 645021642 |
|---|
| Product | homoserine O-succinyltransferase |
|---|
| Protein accession | YP_003179102 |
|---|
| Protein GI | 257783885 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1897] Homoserine trans-succinylase |
|---|
| TIGRFAM ID | [TIGR01001] homoserine O-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATTA ATATTCCAGA TGGTTTACCA GCTAAGAAGA CACTGCAAGA AGAGCGCATT
TTTGCGCTTG AGGAGGAAGT TGCAGAACAC CAGGAGATTC GCCCGCTTCG CCTGGCAATT
TTGAATTTAA TGCCTAAGAA AATTCAGACT GAGACACAAA TTCTCCGCCT GATTTCAAAG
TCTCCTATTC AGGTGACGTG TGACTTTATG CGTATCTCTT CGCATGAATC TAAAAATACT
TCCGCCGACC ATTTGGTTAC GTTTTATTCA ACTTTTGATG ACTTCAAAGA TAAAAATTAC
GACGGTTTGA TTATTACAGG TGCTCCTATT GAGGACCTCA AATACGAAGA CGTAGACTAC
TGGGATGAAT TTTGTCGCAT TGTTGACTGG TCTCAGGAAC ATGTCTTTTC CACCATGTAT
CTGTGCTGGG GCGCACTAGC TGGCCTGTAC TACTTGCACG ACATCCCAAA GAAGATACTA
GGAGCTAAGC TCTTTGGTAT TTTTCCGCAG CGTTTATGCG ACGAGTATTG CTTTCTTACC
AATGGATTTG ACGAGGTACA TTACATGCCG CATTCTCGTC ATGCCGCGAT TGAGACATCA
GCTCTAGTAA ATCATCCCGA GCTTGCTGTG CTTTCTGAGG GATTTACCAG TGGCCCTGCG
CTTCTCGTTA CTAGAGATTT CCATGAGATT TTTGTAACCG GTCATTTTGA ATATGACCGT
GACACTCTTG CAGAAGAGTA TTGGCGTGAC TTCCACAAAG GCCTGCCTAT TCGTTTGCCA
GAGAATTATT TTCCTGACAA CGATCCAGAA AAGCAGCCGC TGTTCACCTG GCGTGCTCAT
GCTAATTTGC TGTATCGCAA CTGGATTAAC TGGGTGTATC AGATGACGCC GTACAATACA
AATAAGATAC CTGCGGCTAT TACAGATCTT CATCAGCGTG TTGTCGAGGC CGATCCTGAT
GCAAGGATGA CCGGTAGGTT CTAG
|
|---|
| Protein sequence | MPINIPDGLP AKKTLQEERI FALEEEVAEH QEIRPLRLAI LNLMPKKIQT ETQILRLISK
SPIQVTCDFM RISSHESKNT SADHLVTFYS TFDDFKDKNY DGLIITGAPI EDLKYEDVDY
WDEFCRIVDW SQEHVFSTMY LCWGALAGLY YLHDIPKKIL GAKLFGIFPQ RLCDEYCFLT
NGFDEVHYMP HSRHAAIETS ALVNHPELAV LSEGFTSGPA LLVTRDFHEI FVTGHFEYDR
DTLAEEYWRD FHKGLPIRLP ENYFPDNDPE KQPLFTWRAH ANLLYRNWIN WVYQMTPYNT
NKIPAAITDL HQRVVEADPD ARMTGRF
|
|---|
| |