Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0010 |
Symbol | |
ID | 8412850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 13169 |
End bp | 14878 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 645021578 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_003179041 |
Protein GI | 257783824 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.290045 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAAT CCCAAAGCGC TCGACTTGAG CGAAAAAAAC TTCTTGGCGA TCCAATTTTG ATAACGACCA TTGTCGTTCT TATCGCCTTC TTAACCCTTT TTATTTTGTA TCCACTTGCC ATTCTTATGG TTGACTCTGT GGTCTCTGAT AATGGGATTA CGCTTGATGT ATTTACGCGC ATTCTATCCA TGCCTTCGTT TGATCGCGCA ATTACCAATA CGCTCAGAGT TGGTTTTGCG GTAGGTATTT TGTCAGCGCT TATTGGTCTT CTTTTTGCTT ATGTTGAAGT TTACGTAAAG CTTCGTACAA AGTTTATGAC AGGACTTTTC CGCGTGGTTT CTATGCTTCC TGTTGTTTCT CCTCCATTTG TTCTCTCACT TTCCATGATT ATGATGTTTG GTAAGAAGGG CCTTATTACT CGAGGTCTTT TAGGAATTTT TGACAACAAC ATCTATGGAT TCTGGGGCAT TTTTATTGTT CAGACCATGT CGTTTTTCCC TGTGTGTTAC ATGATGCTTA AGGGCTTGCT TAAAAACATT GATCCTTCTC TTGAAGAAGC AGCACGTGAC ATGGGTGCAA GCCGCTGGAA AGTATTTACT AGTGTTACGC TTCCTCTTAT TTTGCCTGGT TTGGGTAATG CCTTTCTCGT TTCATTTATA GAATCAATCG CAGACTTTGC TAATCCAATG ATTATTGGCG GTTCTTACGA TACGTTGGCA ACAACTATCT ACCTGCAAAT TACGGGTGCG TACGATAAGC AGGGTGCGGC TGCTATGGCT GTTGTTCTTC TTTCAATTAC GTTGCTCATG TTTGTTGTTC AGAAGTTTGT ATTGGAAGCA AAGAGTACGT CTACGCTTTC CGGTAAAGCA ACGCGCGCTA GGATGCTTAT TACAGACAAC TCTGTTCGCA TTCCACTTAC CATCCTTTGC GCATTGGTAG CGCTCTTTGT TATTGGCATG TATCTCTGTG TTCCTTACGG TTCATTTGTT CGTTCCTGGG GCTCTAATTA TGAGTTAACC ACTAAATGGT TTGAGCAGGT ATTTACCAAG TACCATGGAT TACAGGCGTT TAGTGACTCA TTTATGCTCT CGCTTATTGC AGCACCAATT ACCGCTTTGC TTTCAATGAT TATTTCTTAT CTGGTAGTAA AACGTCGTTT CCGTTTCCGT GGTTTTATCG AGGCTGTATC TATGCTTGCT ATGGCAGTTC CTGGTACGGT TTTAGGCGTT GGCTATATTC GCGGTTTCTC AAGTGGTGTC ATGCATACAG GATTCTTGCA AGGCCTGTAT GGTACAGGAC TTATTCTGAT TATTGTCTTT GTAGTGCGTT CGCTTCCCAC AGGAACACGT TCGGGTATCT CAGCACTCCG ACAAATTGAT AAATCTATTG AAGAGTCTGC GTACGATATG GGTGCCGATA GTTTTACGGT GTTCATGACC GTTACACTGC CACTGATTAA AGATTCGTTT TTGTCGGGCT TGGTAACGGC GTTTGTTCGT TCCATAACAG CAATCTCTGC AGTTATTCTC TTGGTCACAC CAGAGTTCCT GCTCATCACC GTTCAGATTA ATGAGTTTGC AGGTAAGGGT TCATACGGTA TGGCCTGCGC CTTTGCAACA ATCTTGATTG TTATTACCTA TGGCTCGGTA TTGCTTATGA ATTGGGCCAT CAAACACTTT GGCACCAGCC GAGCACTCAA GGAGGAGTAA
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Protein sequence | MAKSQSARLE RKKLLGDPIL ITTIVVLIAF LTLFILYPLA ILMVDSVVSD NGITLDVFTR ILSMPSFDRA ITNTLRVGFA VGILSALIGL LFAYVEVYVK LRTKFMTGLF RVVSMLPVVS PPFVLSLSMI MMFGKKGLIT RGLLGIFDNN IYGFWGIFIV QTMSFFPVCY MMLKGLLKNI DPSLEEAARD MGASRWKVFT SVTLPLILPG LGNAFLVSFI ESIADFANPM IIGGSYDTLA TTIYLQITGA YDKQGAAAMA VVLLSITLLM FVVQKFVLEA KSTSTLSGKA TRARMLITDN SVRIPLTILC ALVALFVIGM YLCVPYGSFV RSWGSNYELT TKWFEQVFTK YHGLQAFSDS FMLSLIAAPI TALLSMIISY LVVKRRFRFR GFIEAVSMLA MAVPGTVLGV GYIRGFSSGV MHTGFLQGLY GTGLILIIVF VVRSLPTGTR SGISALRQID KSIEESAYDM GADSFTVFMT VTLPLIKDSF LSGLVTAFVR SITAISAVIL LVTPEFLLIT VQINEFAGKG SYGMACAFAT ILIVITYGSV LLMNWAIKHF GTSRALKEE
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