Gene Amuc_2144 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_2144 
Symbol 
ID6275517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand+ 
Start bp2611159 
End bp2612805 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content59% 
IMG OID642614205 
Producthydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit 
Protein accessionYP_001878733 
Protein GI187736621 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.207467 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.384871 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACAC CGGATTTTCA TTATCAGGAT CCTTTTCCCA TGGAAAAGGA CGACACCCAA 
TACCGTCTCA TCACGTCAGA CTATGTGAGC GTAGGCGACT TTGAAGGACA CCCCATGCTG 
AAAGTGGAAC CGGAGGGACT GCGCCTGCTG GCAGCGGAAG CCTTCCATGA CGTGGCCTTT 
TTCCTGCGCC CCGCCCACCT GAAGCAGGTG GCCGCCATTC TGGACGATCC GGAAGCCAGC 
GACAATGATA AAAGCGTGGC CCTGACGATG CTCCGCAACG CGGAAGTGGC GTCCGCCGGC 
ATCCTGCCCT TCTGCCAGGA CACAGGAACC GCCACCATCG TAGGCAAAAA GGGCCAGCAG 
GTATGGACCG GCTGTGACGA CTGCGAACAG CTTTCCCACG GCGTTTACGA CGCCTATACC 
CAGAACAACC TGCGCTATTC CCAGACGGTG GCGCTGGATA TGTACACGGA GAAAAACACC 
GGCACCAACC TTCCCGCCCA AATTGACCTG GAAGCGGTGG AGGGCATGAA ATACTCCTTC 
CTGTTCGTCG CCAAGGGCGG CGGCTCCGCC AACAAAACTT ACCTTTACCA GGAAACGAAG 
GCCCTGCTCA ACCCGGCCAC GCTGAAAAAG TTCCTGGTGG AAAAGATGAG TACTCTGGGC 
ACGGCGGCCT GCCCTCCCTA TCACATCGCT TTCGTCATTG GCGGAACCTC TGCGGAAAAA 
TGCCTGAAGA CCGTGAAGAT GGCTTCCACG AAGTACTACG ACAATCTGCC GACTACGGGG 
AACGAACACG GCCGTGCCTT CCGTGACCTG GAACTGGAAA AGGAACTGCA TGAAGAAGCG 
TGCAAACTGG GCCTGGGCGC CCAGTTCGGC GGCAAGTGGT ACGCTCTGGA CGTGCGAGTT 
ATCCGGCTGC CCCGCCACGG CGCCTCCTGC CCGGTTGGCC TGGGAGTCTC CTGCTCTGCG 
GACCGCAACG CGAAAGCCAA GATCACGCCG GAGGGCATCT TTATTGAACA GCTGGAAACC 
AACCCCGGCC AGTATATTCC GGAAGCCCTG CGCATGACCT CCAGCGAAGC TGTCTCCATT 
GACCTGAACC GCCCGATGAA GGAAGTTCTG AAAGAACTGG GCAAGTACCC CGTCACCACG 
CGCCTGAGCC TGAACGGCAC CATCATTGTG GCGCGCGACA TCGCCCACGC CAAGCTGAAG 
GAACGCCTGG AAAAGGGCGA AGGGCTGCCT CAGTATATGA AGGATCACCC CGTGTACTAC 
GCCGGCCCGG CCAAAACTCC TGAAGGCTAC CCCTCCGGTT CCTTCGGCCC CACGACCGCA 
GGCCGCATGG ATTCCTACGT AGACCTGTTC CAGGAAAACG GAGGCTCCAT GATCATGATT 
GCCAAGGGCA ACCGCAGCCA GCAGGTAACG GATGCCTGCC GGAAGCACGG CGGCTTTTAC 
CTGGGCTCCA TCGGCGGCCC GGCCGCCATT CTGGCCAAGA ACAACATCAA AAAAGTGGAA 
CTGCTGGAAT ACCCGGAACT GGGCATGGAA GCCATCTGGA AAATTGAAGT GGAAGATTTC 
CCCGCCTTCA TTCTGGTAGA TGACAAGGGC AACGATTTCT TCGCGAAAAT CCGCGAAGGA 
TGGGCCTGCG CCGGTTGCGG GCATTAA
 
Protein sequence
MATPDFHYQD PFPMEKDDTQ YRLITSDYVS VGDFEGHPML KVEPEGLRLL AAEAFHDVAF 
FLRPAHLKQV AAILDDPEAS DNDKSVALTM LRNAEVASAG ILPFCQDTGT ATIVGKKGQQ 
VWTGCDDCEQ LSHGVYDAYT QNNLRYSQTV ALDMYTEKNT GTNLPAQIDL EAVEGMKYSF 
LFVAKGGGSA NKTYLYQETK ALLNPATLKK FLVEKMSTLG TAACPPYHIA FVIGGTSAEK 
CLKTVKMAST KYYDNLPTTG NEHGRAFRDL ELEKELHEEA CKLGLGAQFG GKWYALDVRV 
IRLPRHGASC PVGLGVSCSA DRNAKAKITP EGIFIEQLET NPGQYIPEAL RMTSSEAVSI 
DLNRPMKEVL KELGKYPVTT RLSLNGTIIV ARDIAHAKLK ERLEKGEGLP QYMKDHPVYY 
AGPAKTPEGY PSGSFGPTTA GRMDSYVDLF QENGGSMIMI AKGNRSQQVT DACRKHGGFY 
LGSIGGPAAI LAKNNIKKVE LLEYPELGME AIWKIEVEDF PAFILVDDKG NDFFAKIREG 
WACAGCGH