| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_2035 |
|---|
| Symbol | |
|---|
| ID | 6273740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2471413 |
|---|
| End bp | 2472168 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642614096 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001878626 |
|---|
| Protein GI | 187736514 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000129798 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.000000370745 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATTA CAGTTACCAA TCCGGAAGGC CGGAACGTTG AATTCAAGGA CCAGCGGGGG
CCGACCTGCG GTCTCTACGC CTTGTCCTTT GTCCTAGAAT ATCTTTATGA TATTAAAATC
CCCGCCACGG CAGACGGGGA CAAGACTAGT GAGTCCCTGA GGAACAAGTT CAAAAAGGAC
GGGAAAACCG TTATTGGAGA ATTATATGAC GCTACTTCAA GCATGGCCAC TTATATAGAG
AAGCTGGCCC CGTCCAAAAT CAAGTGTCAG TCTGTTGCCT GTGACGTCAC TTCCATCATT
GAAACGCTGA ATGGCGGAGG CCTCTGCATG GTTCCTTTTT GCGTGGATGC CTCTGGCAAA
CCCGATCATT CAGGAATTCA CGCTCATTGG TGCGTTTTAC TGAACGTCTG GGAAGTAGAC
GGAACCGCAG TTGCCTGTCA TTGGGGAAAG GATCATGTTT TTAACTTGAG CCAATTGGAG
GAAAGCAACA AAGCCATCAA GGATGTGGAA GAACAGTATT GGGGTAAAAT TCCTGCCGCC
TCTTATTCTT TTTCCATTCC CATTGAGGGA TTGAATTATG TTCAGTGCAA AACGAATACA
GATACTTCCT GTAAATGTGA GTACCCTCTT CCATTCCCCA TCAAGTCCGG TTCCATCAAA
AGTATTCCGG CAAAGCCTCT CAGCCAGACA CTGGCCGGAA AGATGCTGGT TTTTAGGAAT
AACGGGAGCT GTGACGAAAA CGCCGTTTCT CAATAA
|
|---|
| Protein sequence | MSITVTNPEG RNVEFKDQRG PTCGLYALSF VLEYLYDIKI PATADGDKTS ESLRNKFKKD
GKTVIGELYD ATSSMATYIE KLAPSKIKCQ SVACDVTSII ETLNGGGLCM VPFCVDASGK
PDHSGIHAHW CVLLNVWEVD GTAVACHWGK DHVFNLSQLE ESNKAIKDVE EQYWGKIPAA
SYSFSIPIEG LNYVQCKTNT DTSCKCEYPL PFPIKSGSIK SIPAKPLSQT LAGKMLVFRN
NGSCDENAVS Q
|
|---|
| |