| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_2015 |
|---|
| Symbol | |
|---|
| ID | 6274511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 2447996 |
|---|
| End bp | 2448610 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642614074 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_001878606 |
|---|
| Protein GI | 187736494 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0030252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.0171267 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TCAATCTCCA TCTCTACCTG GTTACGGATG AAGCATCCAA ATGCCGCCTC
AGCCTTCTGG AAACCGTACG GAAAGCGGCG GACGGAGGAG TTACCATCGT GCAGTACCGC
TCCACCAATC CGGATGCGGG AACCTGTTAC CGGGAAGCTT TGCCCATACG GGATTTCCTG
GCTTCCCGCG GTATTCCCTT CATCGTCAAC AACCGCATTG ACCTGGCTCT GGCGCTGGAA
GCAGACGGCG TCCACATCGG CCAGAGGGAT CTTCCGGTTC CATCCGTCAG AGCCATGATC
GGCCCGGATA AAATCCTGGG ACTGTCCGTC TCCAATAAGG AACAGCTCCG CGCCGTGGAT
GCCTCCCTGG TGGACTACCT GGGCATGGGC CCCGTCTTCC CCACCATTTC CAAGCTGAAC
GCGCCTCCCG TGCTGGGCGT GGAAGGCTTC GCCGCTCTGG CTTCCCAATC TCCCCTGCCC
GTTGTCGCCA TCGGCGGACT GGACGCGGAA CGGGCCCGTC AAGTGCGCGC CACGGGAACC
GCCTCCGGAA TTGCCGTTGT CTCCGCCATT TGCGGAGCGG AGAATCCGGA AACCGCCGCA
CGGGCTCTTG CCTGA
|
|---|
| Protein sequence | MKKFNLHLYL VTDEASKCRL SLLETVRKAA DGGVTIVQYR STNPDAGTCY REALPIRDFL
ASRGIPFIVN NRIDLALALE ADGVHIGQRD LPVPSVRAMI GPDKILGLSV SNKEQLRAVD
ASLVDYLGMG PVFPTISKLN APPVLGVEGF AALASQSPLP VVAIGGLDAE RARQVRATGT
ASGIAVVSAI CGAENPETAA RALA
|
|---|
| |