| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1858 |
|---|
| Symbol | |
|---|
| ID | 6275469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2259751 |
|---|
| End bp | 2261733 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 642613919 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001878453 |
|---|
| Protein GI | 187736341 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.153141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.576375 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACAAA GGTCTTATTA TTTCAATGAC CTACAGTCTT TTTGTACCCA AACTCTAGAA
GAAATTTTAG GGCAGATTGC TCTTCATACC CCATTTTCTT TAGATCAAAA TTCACGTAAT
TCTTTTGTTC ACGAAATTAG ATTACTCCAA AGTGTTCTTA AAAGTATTCC CTCTGGATCC
ATAGCCCTTG AATACACTAT TCCTCGCATC GGAGAGCGAA TAGATGTCGT AATCGCTTGT
GCTGGTATTC TCTATATTCT TGAATTTAAA GTAGGAGAAT CATCTTATCC AAGACATGCT
ATTGATCAAG TGGTAGATTA TGCACTAGCA TTAAAATATT TCCATCAAGA AAGTTATCAA
AAGAAAATTG TTCCTCTGGT AGTCTGCACT CATGCTCCTT CTAAAGAGTT TCAACTTATA
ATGAACCCAG ATGGGGTTTA TCTTCCTATC CTTTGCAATG ATAATACCTT AGGTCCTAAT
TTAACAAAAC TTACTAACAA TCTGTGTGAT GACGAATTCC ATTTTAAACA ATGGTTAATT
TCGCCATACA TGCCTACTCC CACGATCATT GAAGCAGCTC AAGCACTCTA CCGTGGACAT
GGAGTCAAAG AAATTTCACG GAGTAGTGCC GGAGCCTACA ATCTTAGTCT CACAACAAAG
GTACTAAATC GTATTATTGA ACAAAGTAAA CAGTATCATC AAAAATCTAT TTGTTTTGTT
ACTGGCGTAC CTGGTGCCGG AAAAACGCTA GTAGGCCTCA ATATTGCAAA TGAGCGACAT
CAATATGATA AACAAGAACA TGCAGTTTTT CTTTCCGGTA ATGGTCCCTT GGTTGCTGTC
CTGCGAGAAG CTCTAGTACG AGATGAAATT AAACGCTGTA AAGGCAAAAT AACAAAAATA
ACATCTAAAA GAAAAGTTGC TGCCTTTATT CAAAATATCC ATCATTTTCG TGATACTTAT
CTACCTCCTT CCGAACAAGT TCCTGCGGAA AAAGTAACTA TTTTTGACGA AGCACAACGT
GCTTGGACAA AAGAGCAAAC GGCTAAATTT ATGTTAAAAC GCCATGTTCC CTCCTGGAAC
ATGTCTGAAC CAGAATTCCT CATTAGTGTA ATGGATCGCC ATCAAGATTG GGCTGTAATC
ATTTGTCTAA TTGGAGGTGG TCAAGAAATA CATACTGGAG AAGCTGGCCT TTTAGCTTGG
TTTGATGCAC TAAGAAACCA TTTCCCTCAT TGGAATGTTT ATGTGTCCCC CCAAATCTCT
GATGTAGAAT ATACGCAAGG AAAAACACTT GAATCTCTCT TTATGGGATT ACATCTTTAT
CAGGAAAAAA AACTTCATCT TTCTGTCTCA CTTCGTTCTT TTCGGAATGA AAAAGTTTCA
GCATTTGTAA AATCTCTATT GGATGAAAAC TTACCAATAG CTCAACAACT CTATTCAGAA
CTCTCACTTA ATTATCCTAT TGTCATTACA CGTAGCCTAG AAAAAGCTAA ACAATGGGTA
CAAAATCAAT CCCGAGGTAC AGAACGTTAT GGACTCATTT CTAGTTCAGG AGCCAAACGT
CTACGCCAAT TTGGTATTTG GGTACAGAAC GATATTCAGG CAGAAAATTG GTTTTTAAAC
GATAAAGAGG ATGTACGCTC TTCCTATTTT CTAGAAGAAA CAGCAACTGA ATTTGATATT
CAGGGTCTTG AAATTGATTG GGCAATCGTT GCATGGGATG CAGACTTTCG TATAGAAAAA
GGACATTTTA AAGCTTATAA TTTTAAGGGG TCTAGTTGGA AAATAGTTCG TAAGAAAGAT
GCACAACTCT ATCTCAAAAA TACTTACCGT GTTTTATTAA CACGAGCACG CCAAGGGTTC
GTTATTTTTA TTCCAAAAGG ATGTGACGAG GATTTGACTC GTCACTCCTC CTTCTATGAT
GGTATTTATT ATTACCTAAA AGAAATAGGT ATCAAGGAGC TATGCCTTTC TGAAGAACAA
TAG
|
|---|
| Protein sequence | MIQRSYYFND LQSFCTQTLE EILGQIALHT PFSLDQNSRN SFVHEIRLLQ SVLKSIPSGS
IALEYTIPRI GERIDVVIAC AGILYILEFK VGESSYPRHA IDQVVDYALA LKYFHQESYQ
KKIVPLVVCT HAPSKEFQLI MNPDGVYLPI LCNDNTLGPN LTKLTNNLCD DEFHFKQWLI
SPYMPTPTII EAAQALYRGH GVKEISRSSA GAYNLSLTTK VLNRIIEQSK QYHQKSICFV
TGVPGAGKTL VGLNIANERH QYDKQEHAVF LSGNGPLVAV LREALVRDEI KRCKGKITKI
TSKRKVAAFI QNIHHFRDTY LPPSEQVPAE KVTIFDEAQR AWTKEQTAKF MLKRHVPSWN
MSEPEFLISV MDRHQDWAVI ICLIGGGQEI HTGEAGLLAW FDALRNHFPH WNVYVSPQIS
DVEYTQGKTL ESLFMGLHLY QEKKLHLSVS LRSFRNEKVS AFVKSLLDEN LPIAQQLYSE
LSLNYPIVIT RSLEKAKQWV QNQSRGTERY GLISSSGAKR LRQFGIWVQN DIQAENWFLN
DKEDVRSSYF LEETATEFDI QGLEIDWAIV AWDADFRIEK GHFKAYNFKG SSWKIVRKKD
AQLYLKNTYR VLLTRARQGF VIFIPKGCDE DLTRHSSFYD GIYYYLKEIG IKELCLSEEQ
|
|---|
| |