Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_1517 |
Symbol | |
ID | 6275799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | - |
Start bp | 1811834 |
End bp | 1812520 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642613576 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_001878119 |
Protein GI | 187736007 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000360016 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.000000000680487 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAATGTGC CCCCATTGCA ACCCCATAAC GAGTCCCAGC CTGACGAGCA GACACTTTCC CAATACGCGG AACATACCAG GAAAAGCCTG ATCGCGCGTT TGGAAAACTG GGAAGACCAG CGTACCTGGG ATGAATTTTA CCGGACATAT TGGCGGCTTA TTTATTCCGT CGCCCTCAAG GCCGGATTAA GGGAAGACGA GGCCTGGGAC GTGGTACAGG AAACCATTCT TTCCATCGCC AAGCAGAGCA GGAAAAATAT TTACAAACCG GAACAGGGTT CCTTCAAACT CTGGCTATGG AACATGACCC GCTGGCGCAT CAATGACCAG TTCCGCAAGC GGAAAAAGGA CACGGCCATG CTGATGAACC CTGATGCCAC GGATACCCTG GAACACCCCA TCGACAAAAT CCCGGATGAA GGGAAGAATA ATTTTGACCA GGTATGGGAA CGGGAATGGC AGAATAACCT TCTTCAGGCG GCTCTGGAAC GCGTCAAAGC AAAAGTGTCG CCCAAGCAGT TCCAGATTTT TGACTATTAT GTCCTGCGGG AGTGGGACGC GGCCAAGGTC CGCCGGCAGC TCGGCGTCAC GATTGCCCAG GTCTATCTGG CAAAGCACCG CGTAGGAAGC GCTTTGAAGA AAGAACTGCA ATTTCTTCAA TCCCAGGAAA AGGAAAAAGA AAAATAG
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Protein sequence | MNVPPLQPHN ESQPDEQTLS QYAEHTRKSL IARLENWEDQ RTWDEFYRTY WRLIYSVALK AGLREDEAWD VVQETILSIA KQSRKNIYKP EQGSFKLWLW NMTRWRINDQ FRKRKKDTAM LMNPDATDTL EHPIDKIPDE GKNNFDQVWE REWQNNLLQA ALERVKAKVS PKQFQIFDYY VLREWDAAKV RRQLGVTIAQ VYLAKHRVGS ALKKELQFLQ SQEKEKEK
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