| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1413 |
|---|
| Symbol | |
|---|
| ID | 6275719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1690589 |
|---|
| End bp | 1692796 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642613471 |
|---|
| Product | capsular exopolysaccharide family |
|---|
| Protein accession | YP_001878017 |
|---|
| Protein GI | 187735905 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.44637 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.40956 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCCC AGGATCAGCA GAACAGTGAT CGCATCGTAC GCAATATTGA CTATTTGCAA
GTTTTAAAAA ATCGCTGGAA GGAAGTCTTT CTTGTTTTCC TTCTGGTGCT GGTCATTTCC
GTGGTAGTGA CTTTCTTGAT GCCGCCCTCC TACCGGGCGA CCAGCCAGTT TCAGATTAAA
CTGCCCAAGC CTGTGATGGA TATAGGCAGG GGGGGGGACG TGGTTGCCAC TTCCAACGTG
ACGGCCAACT ACATTCCCAT GCAGTATTCC GTGCTGACTT CCGCCGAAGT GCTTAAAGTG
GTATCCAGAA AACTGAACCT TGCCGCGGAA TGGGGGATGA CGGATGAAAT GGCGGCGACT
AATCTGGCCG GCATGATTAA GGTGGCCCCT GTGCGTGCCA CGGACCTTGT GGATGTCATT
GTTTCCGGTC CGGACCCCAA ACTGGTGCAG AATATTGCCA AGGCGGTGCC TGAGGCGTAC
AAGCAGGACC GTGAAATGCG CGAAAACCGT CTGGTGGAAA CCGCCATCAA GAGCCTGAAG
GATGTCCTCC GGGAACAGGA GGATGCCGTC AATGAAAAAA TGATGGCTCT CAAAAAGCTG
ATTGCGGAGA GCTCCTACCT GCCTACGTCC TGGAGAAACG GTGAACACCG CAGCACCCTG
ACGGCCGGTA TGGAAGAAGA GGAATTCCGG AATGCCAAAG CGCAGGCCAT GGATTTTGAA
AGGAGGGAAA AGGAACTGGC TTCCTATGTG CAGGAATTGC AGCGTCTGCC CGACGACAAG
TTGCTGGATT ACGTGATCAG TTCCGACCTG CTGAATGCGG AGACTGTAGG GGCGGACGCT
CTCCGTAAGA CCTATGCTGA ATTTTCCGAC AAGCTCAAGG AAAAGGAAAA TCTGAAATCC
CAGAATATCG GCGCCAGGCA TCCCAAAATG CTGGCGCTGC TGGAAACGGA AAGGATTCTG
GGGGATAAGC TGAACAAGGA ATTGATAGGC CTGCGTTCTT CCCTGAAGAG CAAGCTGGAA
ATGGTTGCCG CAAGCCGGAA GCACTGGGAG GCGACCGTTG CCCAAAAGGA AGAGGATCTT
CAGAAGCACG TCCTGCAGGT TCCCATGTAT GAACAGGCCA GCCGTGATTA TGACGCTGCG
CTGGACCAGC TTAAGGAACT GGATTCCCGG TACAAAGATG AGATTGCCCG TTTGCGCGTA
CCCCGTGAGG CAATTGAAAT GTATCAGCTG CCGACCTATC CTGCTGCGCC CTACAAGCCG
AATGTGACCA TTAACCTGGC GGTGGGAGCG GGTGCCGGTC TGTTGCTGGG TATCGGATTG
GCCTTGCTTC TGGAATTCAT GGATACCTCC GTGAAGACCA TGGAAGATGT GGAACGGGCT
CTTCAGGTTC CCGTCTTGGG CATTATTCCC AAGAATGTGC CTATTCTGCA TTCTTCCGAT
GTCATGGGGC CGGATGCGGA AGCCTACCGC ATTTTGCGGA CGAACATAGA ATTCAATAAG
AAAGGGCTGG AAGAAATTTC CCTGACCTTT GTTTCCGGGA GCGCCGGGGA AGGGAAGACC
ACCACCCTGT GCAATCTGGC CTATATTTGT GCCCAGGGGG GTTATGCCAC CCTGATGATT
GACGCCGACC TGCGCCGTTC CAAGCTTCAC CGGTATTATG AGCTGGATAA TGAGGTAGGG
CTGACTTCCT ACCTGCTGGA AGATTATCCT CTGGAGGAAG TCATTTTTCA GACGCCCATT
GAAAACCTGT ACGTCATGCC TGCGGGACCC ACTCCCTTTG ACCCTTCGGG CGCCTTGAAT
TCCCGCAAGT TTAATGAATT GCTGCAGGAA GTGAAGCAAC GTTTTGACAT TGTGCTGGTG
GATTCCCCTC CCATCCTGGG GGTCAGTGAC TCCGCCGTCA TTGTAAGCGA GGTGGACATG
ACTCTTATGG TTGTCCAGCC CCGCAAGCTG CCGCTGAAAG CCCTGTTGAG GCAGAAGCAG
GTAATCGAGT CCGTGGGCGG CAACCTGGCC GGCGTGGTGA TGAATAATGT GGACATTACG
TCCGATCACC AATATCAGTA TTACACAACT TACTATTCCT ATTATTCTGC GGATGGCGCT
TCCTCCGGAG AGAACGCGGA TGCCTCTTCC ATGAAGAAGG TGGAACGTTC TGGAAAGGCC
AAGGAGCTGG CAGCCACCCA GTCCCATGAT AGTGAAGATT TGTATTAA
|
|---|
| Protein sequence | MSAQDQQNSD RIVRNIDYLQ VLKNRWKEVF LVFLLVLVIS VVVTFLMPPS YRATSQFQIK
LPKPVMDIGR GGDVVATSNV TANYIPMQYS VLTSAEVLKV VSRKLNLAAE WGMTDEMAAT
NLAGMIKVAP VRATDLVDVI VSGPDPKLVQ NIAKAVPEAY KQDREMRENR LVETAIKSLK
DVLREQEDAV NEKMMALKKL IAESSYLPTS WRNGEHRSTL TAGMEEEEFR NAKAQAMDFE
RREKELASYV QELQRLPDDK LLDYVISSDL LNAETVGADA LRKTYAEFSD KLKEKENLKS
QNIGARHPKM LALLETERIL GDKLNKELIG LRSSLKSKLE MVAASRKHWE ATVAQKEEDL
QKHVLQVPMY EQASRDYDAA LDQLKELDSR YKDEIARLRV PREAIEMYQL PTYPAAPYKP
NVTINLAVGA GAGLLLGIGL ALLLEFMDTS VKTMEDVERA LQVPVLGIIP KNVPILHSSD
VMGPDAEAYR ILRTNIEFNK KGLEEISLTF VSGSAGEGKT TTLCNLAYIC AQGGYATLMI
DADLRRSKLH RYYELDNEVG LTSYLLEDYP LEEVIFQTPI ENLYVMPAGP TPFDPSGALN
SRKFNELLQE VKQRFDIVLV DSPPILGVSD SAVIVSEVDM TLMVVQPRKL PLKALLRQKQ
VIESVGGNLA GVVMNNVDIT SDHQYQYYTT YYSYYSADGA SSGENADASS MKKVERSGKA
KELAATQSHD SEDLY
|
|---|
| |