| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1115 |
|---|
| Symbol | |
|---|
| ID | 6273958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1333195 |
|---|
| End bp | 1334292 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642613166 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001877722 |
|---|
| Protein GI | 187735610 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 79 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATTCG GAATGGCGAG ACATGGAAAA AACCAGAAGG AATATCTGGC TGCGGAAATG
TTATTGAAAG GTAGCGGATT GAATATGCTG GATGCTGCCA GCCTCGCAGT AGAGCTGCTG
AGCCTGTGCG GAGGCAGCCG CAGCATGCGC CGGGCCAGAA AGGCAATTTT TCTGGGTGCT
GAGGAATTGA GGAAAGGGGA AAGGACGGTT TCCTTTTCCG CCGCCGTGGA AGAAATGCTG
AAGGCGAAGC GTAATCTTCG CCCTACGACG TTGCGCGATA TCAGGTATTT CACCGGAGCT
TTGATGCGGA GGTGTCCGGA ATTGAAAGGT TTTCCGGTCC GGAAGCTGAC GCCGGAGCAT
TGCGCCCATT TTCTGGAGGC TGCTTTTACA TCCCACAGGC AGCGTTACAA GGGCCGGGCG
GTGATGAGCG GCGTTTTGTC CTTTTCCCTG CGGCGCGGAT GGTGCGGGGA AAATCCTGTC
GCCCGTGTGG ACTCTCCTTC GTTTCGTGAA CGGACGATTG CCATTTTGGC TCCGGAAGAG
ATAGGAAGCC TTCGGACGGT GGTGGAAGCT CCGGAATTTC GTGACTGCGC TCCGGCTGTT
TGGGTAATGT TGTACGCCGG AATCAGGCCG GGGGAGGTGG TGCGCCTCCA TTGGCGTGAT
GTGGATTTGG AGGAGAGGGT CATTTCCGTA AGGTCCCGAA CCAGTAAAAC GGGGGGAATC
AGGCATGTCA CCATTCATGC TGTGCTCTGG CGGCTTCTGG CGGGATACGG AGCAGGGGGG
CCGGCCGGAC TGTTATGTCC TCCCAATTGG CCGGTGCGCT GGAGGCTGCT CCGGAAAAAA
GCCGGATGGG GGCTGCACAA CCGCTTTGGA GAATGGAGTG CGGACGCGCT GAGGCATACT
TATGCTTCCT ATCACGCCAA ATGGTTCAGG GATTTTTCCC TGCTTCAGCT GGAGATGGGG
CATCGTTCCT CCTCCCTGTT GCGGGAGCGG TACCTGAACA TGGAAGGGGT GAGCCGCGAC
AGGGCACGCC TTTTCTGGGA AGCGCCGGAA CATGGCTGGA ACAACAAAAC CGGCATTGCA
GGAACGGACT TTCTATGA
|
|---|
| Protein sequence | MIFGMARHGK NQKEYLAAEM LLKGSGLNML DAASLAVELL SLCGGSRSMR RARKAIFLGA
EELRKGERTV SFSAAVEEML KAKRNLRPTT LRDIRYFTGA LMRRCPELKG FPVRKLTPEH
CAHFLEAAFT SHRQRYKGRA VMSGVLSFSL RRGWCGENPV ARVDSPSFRE RTIAILAPEE
IGSLRTVVEA PEFRDCAPAV WVMLYAGIRP GEVVRLHWRD VDLEERVISV RSRTSKTGGI
RHVTIHAVLW RLLAGYGAGG PAGLLCPPNW PVRWRLLRKK AGWGLHNRFG EWSADALRHT
YASYHAKWFR DFSLLQLEMG HRSSSLLRER YLNMEGVSRD RARLFWEAPE HGWNNKTGIA
GTDFL
|
|---|
| |