Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_1110 |
Symbol | |
ID | 6273968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | - |
Start bp | 1325543 |
End bp | 1326247 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642613161 |
Product | two component transcriptional regulator, winged helix family |
Protein accession | YP_001877717 |
Protein GI | 187735605 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACCA TTCTTATCGC TGAAGACGAC CACGCCATTT CAGATCTTGT GGCTTATAAT CTGGAACGTG CGGGCCATAC GCCCCTGGCG GCCTATGACG GCCTGACCGC GCTGGAAGTG GCGCGCCGGG ACAAGCCGGA ACTGATCCTG CTGGACCAGA TGATGCCGGG CATGGACGGA CACGGCGTAC TGAGGGAACT GCGCCGGGAC AGCCGCACCC AGAACATTCC CGTCATCTTC CTGACAGCCA AGGCCCAGGC GGAAGACCGC ATCCAGGGGC TGGAACTGGG AGCGGACGAC TATGTGACCA AACCGTTCAG CCCCAAGGAA CTTGTCCTGC GCGTGGCCAG CGTGCTGAAA CGGTGCGAGC ACACGCCGGG CAGCGTCATT GCGGAATACG GCCCCTTCAC TTTTGACAAA AACGCCCTCA AATTCTATAT CGACAAGGAG GAAGTAGACC TGACGGCCAC GGAATTCAAG CTCATGATCC ATATGGTTGA ACGGGAGGGC CAGACCCTGA ACCGCAACGA CCTGCTCAGT TGCGTATGGG GGTACAGCCA CCAGGCCCAG AGCCGTACGC TGGACACGCA CATGAAGCGG CTGCGCCAGA AACTGGCTCC CTACGCGGAC TGCATTGAAA CCGTCCGCAG CATCGGCTAC CGCTTTACCC TGCCGGGACG CCGCATCCCG GAGGAAAAGG CTTAA
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Protein sequence | MATILIAEDD HAISDLVAYN LERAGHTPLA AYDGLTALEV ARRDKPELIL LDQMMPGMDG HGVLRELRRD SRTQNIPVIF LTAKAQAEDR IQGLELGADD YVTKPFSPKE LVLRVASVLK RCEHTPGSVI AEYGPFTFDK NALKFYIDKE EVDLTATEFK LMIHMVEREG QTLNRNDLLS CVWGYSHQAQ SRTLDTHMKR LRQKLAPYAD CIETVRSIGY RFTLPGRRIP EEKA
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