Gene Amuc_1110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1110 
Symbol 
ID6273968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp1325543 
End bp1326247 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content60% 
IMG OID642613161 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_001877717 
Protein GI187735605 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACCA TTCTTATCGC TGAAGACGAC CACGCCATTT CAGATCTTGT GGCTTATAAT 
CTGGAACGTG CGGGCCATAC GCCCCTGGCG GCCTATGACG GCCTGACCGC GCTGGAAGTG
GCGCGCCGGG ACAAGCCGGA ACTGATCCTG CTGGACCAGA TGATGCCGGG CATGGACGGA
CACGGCGTAC TGAGGGAACT GCGCCGGGAC AGCCGCACCC AGAACATTCC CGTCATCTTC
CTGACAGCCA AGGCCCAGGC GGAAGACCGC ATCCAGGGGC TGGAACTGGG AGCGGACGAC
TATGTGACCA AACCGTTCAG CCCCAAGGAA CTTGTCCTGC GCGTGGCCAG CGTGCTGAAA
CGGTGCGAGC ACACGCCGGG CAGCGTCATT GCGGAATACG GCCCCTTCAC TTTTGACAAA
AACGCCCTCA AATTCTATAT CGACAAGGAG GAAGTAGACC TGACGGCCAC GGAATTCAAG
CTCATGATCC ATATGGTTGA ACGGGAGGGC CAGACCCTGA ACCGCAACGA CCTGCTCAGT
TGCGTATGGG GGTACAGCCA CCAGGCCCAG AGCCGTACGC TGGACACGCA CATGAAGCGG
CTGCGCCAGA AACTGGCTCC CTACGCGGAC TGCATTGAAA CCGTCCGCAG CATCGGCTAC
CGCTTTACCC TGCCGGGACG CCGCATCCCG GAGGAAAAGG CTTAA
 
Protein sequence
MATILIAEDD HAISDLVAYN LERAGHTPLA AYDGLTALEV ARRDKPELIL LDQMMPGMDG 
HGVLRELRRD SRTQNIPVIF LTAKAQAEDR IQGLELGADD YVTKPFSPKE LVLRVASVLK
RCEHTPGSVI AEYGPFTFDK NALKFYIDKE EVDLTATEFK LMIHMVEREG QTLNRNDLLS
CVWGYSHQAQ SRTLDTHMKR LRQKLAPYAD CIETVRSIGY RFTLPGRRIP EEKA