| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0970 |
|---|
| Symbol | |
|---|
| ID | 6274183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1157874 |
|---|
| End bp | 1160171 |
|---|
| Gene Length | 2298 bp |
|---|
| Protein Length | 765 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642613024 |
|---|
| Product | SSS sodium solute transporter superfamily |
|---|
| Protein accession | YP_001877583 |
|---|
| Protein GI | 187735471 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4146] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000363528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.258421 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA CACTAGCAAC CATATTCGGG GCGCTCGCCC TGATGACGTG GGGCGCAGCT
GCCCAGGAGG GTCCCGTACC TGCAACGGCG GCTGATGCGC AGCCCGCCTT GGCCGCTCCG
GCCGCGATTC CCGCTGTTGA AGTCCAGCCG GCAGCGGAAA TTCAGCCGGC GGCTCCCGCC
GCAGAGGCAG TACAGGCTGA ACAGACCGCC TCTGCGGAGC CTAAAACGGC CCCTCTTTCC
ATGGTGGAAG TCATTCTCTT CTGCGTGGTC GTGGTGGGCG TGATCGCCCT GGGCATCTGG
AAGAGCCGTG ACCCCGAAGA AACGGAAGAG GAAAAGAAGG CCAAGGGCGC TTCAGACTAT
TTCCTTGCCG GCCGCGGTTT GACCTGGTGG CTGGTGGGTT TCTCCCTGAT TGCCGCCAAC
ATTTCCACGG AACAGTTTGT GGGGATGTCC GGCAAATCGG CCAACTGGGT GGGCATGGCC
ATTGCCGGGT ATGAATGGCT GGCCGCTATC ACGCTGGTGG TTGTAGCCTT CTGCTTCCTC
CCCAAGCTGT TGAAAGGCGG CGTATATACG ATTCCCGAAT TCCTGGAATA CCGGTATAAC
ACGCTGGCCC GTTCCCTGAT GGCCATTGCT ACGCTGCTGA TTCTGGTAGG CGTGCCGACT
GCGGGCGTGA TTTACGCCGG CGCCAAGGTG ATTTCCGTGT TCTTCACGGG ATACTCTGCC
ATGGGCATTG ACTTCGGCGA CATCACCGTC GGCTGCGTTA TCATTGCCTT CTGCGCCACG
GTATACGTGT TCGTGGGCGG GTTGAAAGCC TGCGCCTGGA CGGACCTGTT CTGGGGCGCC
GCCCTGATTG TGGGCGGCGG CGTGGTGGCC TATTTTGCCC TGACGGAGCT CAGCGGCGCA
GACCCGAACC ATTTGATTCA ATCCGCCGCC GCCAATTCCG GCGCGACGGT CGCCTCCCTG
GGGAATCCTT CGGACAGCCT CTGGCATGGG GTGACGCGCT TTTTTGAGCT GAACTCCGGT
GACGCGGCCA GCGGCGTAAA TACCGTGGGC GGCAAGCTGC ACATGATCCG TCCTGCGGAT
GATGCGGAAA TCCCGTGGAC GGCTCTTTGC CTGGGCCTGT GGATTCCCAA CTTCTTTTAC
TGGGGCCTCA ACCAGTACAT CATGCAGCGT ACGCTGGCTT CCAAATCCCT GGCGGAAGGT
CAGATGGGCA TTGTGTTCGC CGCATTCCTC AAGCTCATCA TCCCATTCGT GGTGGTGGTC
CCCGGCATCC TGGCCTATAA CCTGTACCGC AATGACCTGA AGGAACAGGC GGAAGTAAAA
TACGCGGCGG AAATCCGTAA GACGGAAGAT CCCGCCGCAG TCAAGGGCCG CCCCGTCATC
TACAAGCTTA CGGACAGCTT CCTGGTGGAA AACGTGGAGG AAGGCTGTGC CCATGCCATT
CATAACGCGG AAGTAATGAA GGTGGGCGAA GATGTTATGG CCAATTTGAA ACAGGCCTGC
GCCGATTTGA AGGCGGATGC CGCCAACGAC CAGACTACGC TGGCGGAACG CGCCCCGTTC
GTGGAAAAAA TCGCTTCCCT TAACAACAAA ATCATCAAGC CGGCCGTGGA CAACTCGGAT
AACTACTATC TGACGGATAC GCTGGTAGGC TTTGACTATG ACTCCGCCTT CGGCACGTTG
ATCAGGAAGT TGCTTCCCGG CACGGGCTGG ACATGGTTTG TGCTTGCGGC CCTCTTTGGA
GCGGTGGTGT CTTCCCTGGC ATCCATGTTG AATTCCGCGT CCACCATCTT TACGATGGAT
ATTTACAACA AGCTGCGCAA AAATGCGGGG CCCACGGAGC TGGTTACCGT CGGCAAGATT
GGTTTGCTGG TGTGCGCCGT GATCGCCCTG ACCATTGCTC CGTTCCTGGA CAGCCCGGCC
TTTGGCGGCA TCTTCAACTT CATTCAGGAA TTCCAGGGCT TCCTGAGCCC GGGCGCCCTG
TGCGTGTTCC TCTTCGGCTT CTTTGTGCCC AAGTGCCCGC GCATCTTCGG TTGGCTGGGT
ATCGTCATTA ATGCCCTCCT GTACGGAATC CTGAAGGTAT GGCAGCCGGA AATGGCCTTC
CTGAACCGCA TGGCCGTGTG TTTCATCACG GTAGTGGTCA TCGGCTTCAT CTTCACGGCG
GTGAACGCCG CCCGCGGCGG ACAGCCTATC GTGCTGCCCG ACAGGGGCGT GGTTGCCCTT
CAGTCCTCTT CACGGGCTAA AATCTTCGGA TGGCTCGTGG TTGCCGCGAC GGTTGCCCTG
TACATCATCT TCTGGTAA
|
|---|
| Protein sequence | MMKTLATIFG ALALMTWGAA AQEGPVPATA ADAQPALAAP AAIPAVEVQP AAEIQPAAPA
AEAVQAEQTA SAEPKTAPLS MVEVILFCVV VVGVIALGIW KSRDPEETEE EKKAKGASDY
FLAGRGLTWW LVGFSLIAAN ISTEQFVGMS GKSANWVGMA IAGYEWLAAI TLVVVAFCFL
PKLLKGGVYT IPEFLEYRYN TLARSLMAIA TLLILVGVPT AGVIYAGAKV ISVFFTGYSA
MGIDFGDITV GCVIIAFCAT VYVFVGGLKA CAWTDLFWGA ALIVGGGVVA YFALTELSGA
DPNHLIQSAA ANSGATVASL GNPSDSLWHG VTRFFELNSG DAASGVNTVG GKLHMIRPAD
DAEIPWTALC LGLWIPNFFY WGLNQYIMQR TLASKSLAEG QMGIVFAAFL KLIIPFVVVV
PGILAYNLYR NDLKEQAEVK YAAEIRKTED PAAVKGRPVI YKLTDSFLVE NVEEGCAHAI
HNAEVMKVGE DVMANLKQAC ADLKADAAND QTTLAERAPF VEKIASLNNK IIKPAVDNSD
NYYLTDTLVG FDYDSAFGTL IRKLLPGTGW TWFVLAALFG AVVSSLASML NSASTIFTMD
IYNKLRKNAG PTELVTVGKI GLLVCAVIAL TIAPFLDSPA FGGIFNFIQE FQGFLSPGAL
CVFLFGFFVP KCPRIFGWLG IVINALLYGI LKVWQPEMAF LNRMAVCFIT VVVIGFIFTA
VNAARGGQPI VLPDRGVVAL QSSSRAKIFG WLVVAATVAL YIIFW
|
|---|
| |