Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_0787 |
Symbol | |
ID | 6274393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | + |
Start bp | 923535 |
End bp | 924410 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642612838 |
Product | Rhomboid family protein |
Protein accession | YP_001877402 |
Protein GI | 187735290 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.565548 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAGCGG AGAACGAGAA CTGGGGAGAT ACGGTACGGA ATCATCTGTT TGACCAGCGC AGCGCCGTCA TGGTGCACTG GCTGATTCTG CTCAATGTAG TCATCTTTAT CCTGGGATTC TTCTTCCAAG TGGACATCCC AAGGAATATT TACCCGCCTG TCCATTTGGA CTTGATCCAG CTTTACGGAG CTTACAGCGA ATATACGTGC TTTCACGAGG GGGAATTATG GCGGTTGCTT ACCTATCAGT TTCTTCACGC CAATCTGGGG CACATCATGT TCAACATGAT TGCCCTGTGG TTTTTCGGCC CGGTTGTAGA AGAACGTTTC GGCCATTGGC GCTTCCTGCT GTATTACCTG TTTTGCGGCG TGGCTGCAGC CCTGTTTTCC TCCCTGCTGG GGTACATGGG ATTTTTTGAT CCGGAATGGC GCTTCATTCC CATGGTGGGG GCCTCAGGTT CCATTTACGG CATCATGGCC GCATGCGCGG TGCTCTTTCC CCATGCCCGG GTACAGCTTC TGTTTCCTCC GGTTAATTTG AGCGTGCGCC AGTTTGCCCT GGCCGTTCTC GGAGTCGCCG CAGCCGTCAT TATCTTCCAA TGGAACAATG CGGGCGGGGA AGCCGGCCAT CTGGGCGGCA TGTTCGCCGG ATTTATTCTG ACATTGCTGA TTTTATGGAA GGAAAAGATG TCTTCCCCAA GACGGAAAGC CGCCTCTTCT TCCCACTATT CCCCTGAGCC TTCCAGCCGC CGCCCGGCAC AGGCTTACCC CTCTGAAAAG GAGGTGGATG AAATCATGGA AAAAATATCC AGGTCCGGCC TGTCCAGCCT GACGGAGGAG GAACGGGAAA TTCTCCGGCG CGCTTCCCGG CGCTGA
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Protein sequence | MRAENENWGD TVRNHLFDQR SAVMVHWLIL LNVVIFILGF FFQVDIPRNI YPPVHLDLIQ LYGAYSEYTC FHEGELWRLL TYQFLHANLG HIMFNMIALW FFGPVVEERF GHWRFLLYYL FCGVAAALFS SLLGYMGFFD PEWRFIPMVG ASGSIYGIMA ACAVLFPHAR VQLLFPPVNL SVRQFALAVL GVAAAVIIFQ WNNAGGEAGH LGGMFAGFIL TLLILWKEKM SSPRRKAASS SHYSPEPSSR RPAQAYPSEK EVDEIMEKIS RSGLSSLTEE EREILRRASR R
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