| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0436 |
|---|
| Symbol | |
|---|
| ID | 6274527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 520258 |
|---|
| End bp | 521025 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642612486 |
|---|
| Product | HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| Protein accession | YP_001877055 |
|---|
| Protein GI | 187734943 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000408173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 81 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACG ATTGGAAAAA AAGAGGCGCA GCGCTGTTTG ATATGGACGG CACGCTCCTT
CCCTGGGATA CGCAATATAT TTTTTCCTGT TTTGTGGTGA GGCGCCATCC TTGGAGACGC
TTGCTGATTT TTCTTTTCCT GGCCTGTATT CCGCTCTATA TTTTGAGAAT ATGGGATGAG
AACCGGATGA AGAGGGCTTA TCTCATGTAT TTGTGGGGGC TTCCCGCTGA AACGGTGCGG
GAATATGGAC GGAAGTTTGC CGAGATGGCG CAGGAATGGA TTTATCCGGA GCTGAAGGAG
CGGCTGGCAG GGTATCGGAA GAAGGGTTAT TTGTGTCTCA TGGTTTCCGC TTCTCCATCA
TTTTACGTGA AGCCCCTGGG CGAACTGCTG GGATTTGACG AAGTTCTGGG AACGGATGTG
CTTCTGGAGG AACGCATGCC GGCAATGCCG GAACTGCCGA ACGGTAATAA TAAGGGGGCG
GTGAAGGTGG AGCGTCTGCG GGAGCGGAAT GTACTGCCGG AACATGGTGT TCTGGAAAAC
GCCGTTGCCT ACAGCGACAG TGCCGCGGAT CTGCCCATGC TGCTTTCCTG CAGGCGGAGG
GTTCTGGTGA ATCCTTCTCC TGCCCTGAAA GAAGACAGGC TTCTGGATGG TGCGGAGTGT
CTGTATCCGG CCAGGCCTTG GAAGGGAAGG TTTGGCAAGA TATGGAGAAT TGGATTTTTT
GTCATGGGGT TGGTGGATGT AAATAATGTG AAATCAATGA CTTGCTGA
|
|---|
| Protein sequence | MTDDWKKRGA ALFDMDGTLL PWDTQYIFSC FVVRRHPWRR LLIFLFLACI PLYILRIWDE
NRMKRAYLMY LWGLPAETVR EYGRKFAEMA QEWIYPELKE RLAGYRKKGY LCLMVSASPS
FYVKPLGELL GFDEVLGTDV LLEERMPAMP ELPNGNNKGA VKVERLRERN VLPEHGVLEN
AVAYSDSAAD LPMLLSCRRR VLVNPSPALK EDRLLDGAEC LYPARPWKGR FGKIWRIGFF
VMGLVDVNNV KSMTC
|
|---|
| |