| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0415 |
|---|
| Symbol | |
|---|
| ID | 6274833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 495135 |
|---|
| End bp | 496625 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642612465 |
|---|
| Product | rfaE bifunctional protein |
|---|
| Protein accession | YP_001877034 |
|---|
| Protein GI | 187734922 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
|---|
| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02198] rfaE bifunctional protein, domain I
[TIGR02199] rfaE bifunctional protein, domain II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0298822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGGC TGCATACATT GATTGACGGA TTTTCCCGGG TGCGGATTCT CTGCATCGGG
GACGTGATGC TGGATAAGTT CCTGTATGGG AGCGTCAGCC GTATTTCGCC GGAGGCTCCG
GTTCCCATCA TGAAGATGGA CCGGGAGACG CGCATGCTGG GAGGCGCGGG CAATGTCGTG
TCCAATCTGT GCGCGCTGGG ATGCCGCACC ACTTTTATCA GCGTGGTCGG GGATGATGGC
CATGGGCGGC AGGTAAGGCG TTTTCTGGAA GAGACGCACT GCGTTCCGGA GCTGGTGGAG
TGCGAGGGGT ATGAGACGAC CGTGAAGATC CGTTTTGTGG CGGGCAAGCA CCATTTGCTG
AGAGCGGATC AGGAACAGCC GCTGAGGATG GAGCCGGAGC TGGCTTCCCG TTTTTTGGAA
CGAGTGGATG CCTGTTTGCC GGAGGCGGAT CTTGTCCTTT TGTCCGATTA CGGGAAAGGC
CTGTTTGAGG GACGAACCGC CCCGGATGTG ATTGCCCGGT GCCGTGCGGC GCGCAAGCCC
GTTATTGTGG ACCCGAAGGG AGCGGATTAT TCCCGCTATA GGGGGGCCAC GCTGGTGAAA
CCCAATATGA AGGAGTTCCA GGAGGCTACC GGCGTGGCGC TCAATCCTGC CATGGACGGG
TGGGAACAGG ATGCCGTGGC GGGGGCGCAG AGGCTGTTTT CCGAATTCGG CATTGAGAAT
CTGATTGTCA CTTTGAGCGA ACACGGCATG ATTTTCATTC CTTCCTCCAG CCCTTCCGAT
TTTGTCTGCA TTCCTACGGA GGCCCGGGAT GTTTTTGACG TGTCCGGTGC GGGTGATACC
TCCCTCGCCA GTCTGGGCGC GGCGCTGGCC GCCGGAGCCG CAGTGCCGGA TGCTCTGGTC
GTGTCCAATG TGGCCGCCGG CATCGTAGTG GGCAAGTTCG GAACGGCCAG CGTGACCGGA
ACGGAATTGA AGGAGGCGTT GAAGGAGAAG GATATCCAGA CGCCCTCCTG GCGTCACCGC
GACAATATCC TGACGCCGGA GGCCGCGGCG GAGCTGGCGG AACGTTTCCG CCGTGAGAAG
AAGGTGGTTG GATTTACAAA CGGTTGTTTT GATTTGCTCC ACCTGGGGCA TCTGCATTCC
TTTATGAAGG CGCGTGAAGC GTGTGACGTG CTTTTCGTAG GGTTGAATAC GGACGCCTCC
ATCAAGCGGC TGAAGGGCGA GGACAGGCCG ATTAATAATG AGGAGATGCG TTCCCTGCTG
CTGGCATCCC TGGATTTTGT CGATTATGTA GTGCCGTTTG ATGAAGATAC GGCTCTGCCG
CTGATTGAGA AGCTGCGTCC GGACGTGATT GCCAAAGAAG GGTATCCCCT GGAATTCTGG
CCGGAAGGAC AGTTCGTGAA ATCTTATGGA GGGCAGGCTC TTGAACTGCC CCGCCTGGAG
GGCTTTTCCT CCACCAATAT CATCAACCGC ATGAAAAGCA GCCCGGAATG A
|
|---|
| Protein sequence | MNRLHTLIDG FSRVRILCIG DVMLDKFLYG SVSRISPEAP VPIMKMDRET RMLGGAGNVV
SNLCALGCRT TFISVVGDDG HGRQVRRFLE ETHCVPELVE CEGYETTVKI RFVAGKHHLL
RADQEQPLRM EPELASRFLE RVDACLPEAD LVLLSDYGKG LFEGRTAPDV IARCRAARKP
VIVDPKGADY SRYRGATLVK PNMKEFQEAT GVALNPAMDG WEQDAVAGAQ RLFSEFGIEN
LIVTLSEHGM IFIPSSSPSD FVCIPTEARD VFDVSGAGDT SLASLGAALA AGAAVPDALV
VSNVAAGIVV GKFGTASVTG TELKEALKEK DIQTPSWRHR DNILTPEAAA ELAERFRREK
KVVGFTNGCF DLLHLGHLHS FMKAREACDV LFVGLNTDAS IKRLKGEDRP INNEEMRSLL
LASLDFVDYV VPFDEDTALP LIEKLRPDVI AKEGYPLEFW PEGQFVKSYG GQALELPRLE
GFSSTNIINR MKSSPE
|
|---|
| |