| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0409 |
|---|
| Symbol | |
|---|
| ID | 6274827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 489481 |
|---|
| End bp | 490527 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642612459 |
|---|
| Product | putative substrate-binding protein of aliphatic sulfonate ABC transporter |
|---|
| Protein accession | YP_001877028 |
|---|
| Protein GI | 187734916 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.830213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTT CCAGATTCCT GATGATTTTA CCGGCCCTGT TTTTATGCCT GCTGGCTGTT
TCCTGCGGAA AGAAGGAGAA GGAAGATCCC AATGTCGTGG AGTTGAACTT CGGTCATTTT
CCCAACGTGA CACATGTGCA GGGCCTGGTG GCGCATCATT TTTCCCGGCA GGGGAAGGGG
TGGTTTGAAG AACGGCTGAA GGAGGCTACC GGAAAGGATG TCAGGATCAA CTGGTACGTG
TACAATGCGG GCCCCAGCGC CATGGAAGCC GTGTTCGCCC GGTCCATTGA ACTGGCTTAT
GTGGGGCCCA GCCCGGCCAT CAATGCGTTT GTGCGTTCCC GCGGGGAGGA TATCAGGATG
ATTGCCGGAG CTGTGGAAGG AGGCGCCGCC CTGGTGGTTC CGAAGGATTC CTTGCTGAAG
GAGCCTGCGG ATTTCCGCGG CAAGGTGATT GCTACTCCCC AACTGGGGAA TACGCAGGAT
GTTTCCGCCC GCGCCTGGTT TTCCCGCGGC GGCCTGCATG TGACGCAGCG CGGCGGGGAC
GTGACGATTC TGCCGACTCC CAACCCCGAA CAGCTCAGCC TGTTCCGGCA GGGCAAGCTG
GACGGCGTGT GGACGGTGGA ACCCTGGGTG AGCCGCCTGG TGCTGACGGC GGGAGGCAGG
GTGCTGGTGG ACGAGAAGGA GTCCATCGCG ACCGTACTGG TATGCGGAGC GGAGTTTCTC
AGGGAAAAGC CGGAGGTGGC GAAAGCCCTG GTGCAGGCGC ATGAGGAACT GAACGAATGG
ATAAGGCTGC ATCCGGATGA GGCCCAGTTA ATCGTGGTCA GGGAGCTGGA GGAGCTGACG
CATTCCAGAA TAGACCCGGC ATTGATTGCG GAGGCCTGGA AAAGCATTGT CATCAAGGAC
AGGATTTCCA TTCCCAAGCT CCGGCAGTTT GTGCAGGACG CCCATCAGGC CGGATTTATG
AAAGAGGTTC CGGATATAGG CGGCCTGGTG GTGCCGGAGG CGGCGGAGGA ACAGTTGACC
ATGGCGAAGG AGGCGGGCGG AAGATGA
|
|---|
| Protein sequence | MTRSRFLMIL PALFLCLLAV SCGKKEKEDP NVVELNFGHF PNVTHVQGLV AHHFSRQGKG
WFEERLKEAT GKDVRINWYV YNAGPSAMEA VFARSIELAY VGPSPAINAF VRSRGEDIRM
IAGAVEGGAA LVVPKDSLLK EPADFRGKVI ATPQLGNTQD VSARAWFSRG GLHVTQRGGD
VTILPTPNPE QLSLFRQGKL DGVWTVEPWV SRLVLTAGGR VLVDEKESIA TVLVCGAEFL
REKPEVAKAL VQAHEELNEW IRLHPDEAQL IVVRELEELT HSRIDPALIA EAWKSIVIKD
RISIPKLRQF VQDAHQAGFM KEVPDIGGLV VPEAAEEQLT MAKEAGGR
|
|---|
| |