Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_0280 |
Symbol | |
ID | 6275153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | - |
Start bp | 339969 |
End bp | 340853 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642612334 |
Product | ribonuclease HIII |
Protein accession | YP_001876903 |
Protein GI | 187734791 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1039] Ribonuclease HIII |
TIGRFAM ID | [TIGR00716] ribonuclease HIII |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000720364 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACTG ACGCCCAGGC CGGAAGGCTT GAGTCCATTC TTGAGGAAAA GGGGTTTGAA AGAAGAGAGA TTCCCTATGC GCGTTTTTCA TTTGCCGGGC CTTCCCTGCT GGCGACGGTT TACGAGAAGA AGAACAAGCT TCTTCTGCAG GGAAAGGGAA CGGATGATTT TATAGAGTTT ACGCTGGAAC CGCAGGTGAC CGGAGTTTTG GCCCAGCCGG AAGAGATGGA AAAAGGATGC GGTTTTGTTC CCCACTTCGG GATTGACGAG AGCGGAAAGG GAGATTACTT CGGCCCGCTG GTGGTGGCCG GCGTTTATGT GGACGGGGGC ATCGGCGCCG CATTGCGCAA GCTGGGCGTT TGTGACAGCA AGCTGGTAGG GTCTTCATCC AGAATCCGTT GCCTGGCGGA GGGGATCCGC AGGGTGCCGG GCATCCGGTT TCATCTGGTA AGCATTGGCC CGGAACGGTA TAACCAGCTT TATCCGGAGT TCGGGAATTT GAACCGTTTT CTCGCCTGGG GGCATGCTAC GGTGATTGAG GGGCTGGCGG CCAAGGTGCC GGATTGTCCC ATGGCATTGA GCGACCAGTT CGCCAATCCG TTTGTTCTGA AGAGGGCGCT TGCCGCCAAA AAGGTGTGTG TCCGGCTGGA ACAGCGTGTC CGGGCGGAGA GTGATATTGC TGTGGCTGCG GCATCTATTC TGGCGCGCGA ACGTTTTGTG AACTGGATGG ATGCGGCGGG AGAGGGCGCC GGCATGAAGT TGCCGCTGGG AGCTTCCGGC CAAGTGGTGA AAGCTGCGCG CCAGCTGGTG GCCCTGCATG GGGAAGAAAT GCTGCCCAAG GTGGCCAAGA TGCATTTTAA GACCACACGG AATGTGTTGA AGTAG
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Protein sequence | MLTDAQAGRL ESILEEKGFE RREIPYARFS FAGPSLLATV YEKKNKLLLQ GKGTDDFIEF TLEPQVTGVL AQPEEMEKGC GFVPHFGIDE SGKGDYFGPL VVAGVYVDGG IGAALRKLGV CDSKLVGSSS RIRCLAEGIR RVPGIRFHLV SIGPERYNQL YPEFGNLNRF LAWGHATVIE GLAAKVPDCP MALSDQFANP FVLKRALAAK KVCVRLEQRV RAESDIAVAA ASILARERFV NWMDAAGEGA GMKLPLGASG QVVKAARQLV ALHGEEMLPK VAKMHFKTTR NVLK
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