Gene Amir_6280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_6280 
Symbol 
ID8330491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp7370108 
End bp7370704 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content72% 
IMG OID644946711 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_003103930 
Protein GI256380270 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.716095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGCAC GCGAGTTGCG AATTCCCGGT GCGTTCGAGT TCACACCTTC GGTTTTCCCG 
GACGACCGCG GCTTCTTCGT CGCCCCGTTC CAGGAGTCGG CGTTCGAGCG GGCCACCGGG 
CACCGGCTGC GGGTCGCGCA GGTGAACCAC TCGCAGTCCC GGCGCGGCGT GATCCGGGGG 
CTGCACTACG CGGACGTGCC GCCGGGGCAG GCGAAGTTCG TGCACTGCCC GCGCGGCAGG 
CTGCTGGACG TGGTGGTGGA CGTGCGGGTC GGGTCGCCGA CGTTCGGGCA GTGGGACGCG 
GTGGAGCTGT CGGCGGAGAA GTTCAACGGC GTGTACCTGC CCGAGGGGTT CGGCCACGCG 
CTGATGGCGC TGGAGGACGA CACGGTCACC GCGTACCTGT GCAGCGAGGG GTTCAACCCG 
AAGGCGGAGC GCGGCGTCGA CCCGCTGAGC CTGGACCTGC CGTGGCCCGC GGGCGTGGAG 
CCGGTGCTGT CCGAGAAGGA CGCGCAGGCG CCGAGCCTGG CGCAGGCGCG GGAGCAGGGC 
CTGCTGCCGG ACTACGAGGA GTGCGTCCGC TGGTACTCGG AGCTCAAGCG CGCCTGA
 
Protein sequence
MQARELRIPG AFEFTPSVFP DDRGFFVAPF QESAFERATG HRLRVAQVNH SQSRRGVIRG 
LHYADVPPGQ AKFVHCPRGR LLDVVVDVRV GSPTFGQWDA VELSAEKFNG VYLPEGFGHA 
LMALEDDTVT AYLCSEGFNP KAERGVDPLS LDLPWPAGVE PVLSEKDAQA PSLAQAREQG 
LLPDYEECVR WYSELKRA