Gene Amir_5090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5090 
Symbol 
ID8329288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp6065558 
End bp6067021 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content76% 
IMG OID644945526 
Productprotein serine/threonine phosphatase 
Protein accessionYP_003102758 
Protein GI256379098 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000290329 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCAGG GGTATTGGCG CGGGGCCGGA CAGGGGCCCG CCGCGGGTGC CGAGGGGGGC 
GGTCAGGAGG GCACGGCGGA GGGCTTCACC CCGGAGAGCC TCACCCCGGA GAACTGGCGC
CTGCTCGTCG GCGGGCTCCA CGAGGCCGTC GTCGTGCTGG ACCCGGAAGG CGTGGTGCGC
CTGGCCAACC CCCCGGCCGA GGCGCTGTTC CCGGACGCCC GCGTCGGCGT CGTCGCCGCG
CCCGGAGGGC GGTCGCAGCA GCTCGGGGAC GGGTGGGTCG CGCACTACCG GACGCCCGAG
GACTTGCTCG ACGGGGTGAC CAGGCGGCTC GACGGGGCGG TGGACCGGGA CGACGCGCTG
CGGGCGGTGG TCGAGCTCGC GCCCGCAGGT CACGCGGTCG TGGTGGTGCC GGGGCAGCGC
GGCAGGCTGG AGTGGTGGCG GCGGTCCTCG GGTGGGGACG TGGTGGTGAG CCGGGGGACG
CGGCAGGTCG CCGAGGGCGT GCCGGGGCTG ACGGACGTGC TGGACGGGGT GCGGGAGAGC
GTCGAGCTGG TCGAGCCGGG TGACGCGCCC TGGGCGCTGC AGGCGGGCGC GCCGACCAAG
GCGACCGCCG TGCCGCTCAC GCCCGGCGCC GCGCTGGTGT GCTTCGGGCC GTCGGGTGAC
GCGGAGCTGC TGCGCCGGTT CGCCGAGCGC GCGGCGGCGG CGATCGCGGC GGGGGAGCGG
TTCGGGGAGC AGCGGCGGAC CGTGGACGCG CTGCGCGCGG GGCTGCTGCC GACGCCGCTG
CCGCAGGTCG CGGGGGCGCG GCTGGCGCAG GTGTTCGAGC CCGCGCACCG GGCGACCATG
ATCGGTGGCG ACTTCTACGA CGTGCACCCG AGGGACGACG GGAGCGCGGC GTTCGCGCTG
GGGGACGTGG CGGGCAACGG GGTCGAGGCG GCGGTGCACA GCGGGCGGGT GCGGCAGAGC
CTGCACACGC TGCTGCTGGT CGAGCAGCGG CCCGCGCAGC TGTTGCACTT GTTGAACACG
GCGTTGCGGG CGGCGGGGAG CAGGTTGTTC ACCACGATCG TGGTGGGCAC GTTCGTGCCG
GTGCAGGCCG GGGGGCTGCG GATGACGCTC GCGGCCGGTG GGCACCCGTC GCCGCTGGTG
CTGCGGACGG GTGGGCGGGT GGACGAGATC GCGGTGCGCG GGGGGATCGT GGGGGTGCTG
CCGGAGGTCC GGTTCAGCCA GGCCACGGTG ACGTTGTCGC CGGGGGAGAC GTTGTTGCTG
TACAGCGATG GGGTGACGGA GGCCCGGTCT CGGGGGGATC GGGCGGAGCT GTTCGGGGAC
GAGCGGTTGT CGGAGGCCCT GGCGGGGTGC GCGGGGCTTG GGGCGCAGGA GATCGCGGAG
CGGTTGCGGG GGGTTGTGTT CGAGTGGTTG GGGGATGCGG AGCATGACGA TCTGACGTTG
TTGGTGGTGC AGGCGGAGGG GTGA
 
Protein sequence
MAQGYWRGAG QGPAAGAEGG GQEGTAEGFT PESLTPENWR LLVGGLHEAV VVLDPEGVVR 
LANPPAEALF PDARVGVVAA PGGRSQQLGD GWVAHYRTPE DLLDGVTRRL DGAVDRDDAL
RAVVELAPAG HAVVVVPGQR GRLEWWRRSS GGDVVVSRGT RQVAEGVPGL TDVLDGVRES
VELVEPGDAP WALQAGAPTK ATAVPLTPGA ALVCFGPSGD AELLRRFAER AAAAIAAGER
FGEQRRTVDA LRAGLLPTPL PQVAGARLAQ VFEPAHRATM IGGDFYDVHP RDDGSAAFAL
GDVAGNGVEA AVHSGRVRQS LHTLLLVEQR PAQLLHLLNT ALRAAGSRLF TTIVVGTFVP
VQAGGLRMTL AAGGHPSPLV LRTGGRVDEI AVRGGIVGVL PEVRFSQATV TLSPGETLLL
YSDGVTEARS RGDRAELFGD ERLSEALAGC AGLGAQEIAE RLRGVVFEWL GDAEHDDLTL
LVVQAEG