Gene Amir_5084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5084 
Symbol 
ID8329282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp6058199 
End bp6058765 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content75% 
IMG OID644945520 
Productprotocatechuate 3,4-dioxygenase, alpha subunit 
Protein accessionYP_003102752 
Protein GI256379092 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3485] Protocatechuate 3,4-dioxygenase beta subunit 
TIGRFAM ID[TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGAGC GGTGGCGGCC CACGCCGTCG CAGACCGTCG GCCCGTTCCA CGGCGTCGCC 
CTGCCCTGGG CGGACGGGCC CTACGCCGTG GCCGAGGGCA CGCCGGGCGC GTTCTGGATC 
ACCGGGACCG TGCGCGACGG GGCGGGCGAG CCGGTCGCCG ACGCGGTCGT GGAGACCTGG 
CAGGCCGACC CGGACGGCCG GTTCGACCAC CCCGACGACC CGCGCGGTCC GGTGTCGCGC 
AACGGTTTCC GGGGTTTCTC GCGCAGCGGC ACCGCGCCGT CGGGGGAGTT CCGGCTGCTG 
ACCGTGAAAC CTGGCCCGCT GCCGTTCGGC GACGGTCGCG CGCAGGCCCC GCACCTGGAC 
GTCTCGGTGT TCTGCCGGGG CCTGCTGGTG CGGCTGGTGA CCCGGATCTA CTTCCCCGAC 
GAGCCCGCCA ACGCCGAGGA CCCGGTGCTG GCGTCGATCC CCGACCCGGC CGCGCGCGCC 
ACGCTCGTCG CGGTGGCCCA GCCCGGCGGG TACCGCTTCG ACATCCACCT GCAGGGGGAA 
CGTGAAACCG TCTTCTTCGA CCTCTGA
 
Protein sequence
MTERWRPTPS QTVGPFHGVA LPWADGPYAV AEGTPGAFWI TGTVRDGAGE PVADAVVETW 
QADPDGRFDH PDDPRGPVSR NGFRGFSRSG TAPSGEFRLL TVKPGPLPFG DGRAQAPHLD 
VSVFCRGLLV RLVTRIYFPD EPANAEDPVL ASIPDPAARA TLVAVAQPGG YRFDIHLQGE 
RETVFFDL