| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5049 |
|---|
| Symbol | |
|---|
| ID | 8329247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 6006185 |
|---|
| End bp | 6009280 |
|---|
| Gene Length | 3096 bp |
|---|
| Protein Length | 1031 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644945485 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_003102717 |
|---|
| Protein GI | 256379057 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.424824 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACAGCG CACGTGCTGG TTTCCGCCGT CGAGACCTGC TGCGCGGGGC CGCCGCCGCC
GGCGGTGTCG CCCTGGTCGG GCCACCCGGC CTCGCCGCCG CACAGGACAG CGAGTTGTCG
GGCGCCCTCC GGCGGTTCAC CGCCACCGAG GGCACCAACA TCACCGCCGC CCTCTCCCCG
GACGGCCGCA CCATCGCCAT CGACCTCTAC ACCCGCATCT GGCTCCTCCC CGCGTCCGGC
GGCAGGGCCC GCCCGCTCAC CGACCCCGAG CAGGACGCCA CCCGCCCGCA CTTCTCCCCG
GACGGCCGCA GCCTGGTCTT CCAGTCGTAC CGCGACGGCA ACTACCACCT GTGGACGATC
GGCGTCGACG GCCGCGGCCT GCGCCGGCGC ACCTCCGGCC CGACCGACCA CCGCGAACCC
CGCTTCTCCC CGGACGGCCG CGCCATCGCC TACTCCGGCG ACGCGGGCGC GGACGGCTAC
CACCTGTGGC TGCTCGACCT GGCCACCGGC CGCACCACCC GCCTCACCAC CGGCCCGAAC
GACGACGGCG AACCCGTGTT CAGCGCCGAC GGCCGCCACC TCGTCTGCAC CGCCGACGGC
GCCGCGATCG ACCGGATCAC CCTGGACGGC GGAGCCCGCA CCCGCCTCGT CCAGCCCACC
ACCGGAACCC GCGTCCTCGC ACCCGGCCTC ACCCCGGACG GCCGCCTCGT GCACACCGCC
TTCGCCGGGC CCACCACCTC CCTCGTCGTC GACGGCCGGG TCGTCAGCGC CGACGAGGAC
CTGTTCGGCT CCAGCCCGCA GTGGCTCGGC GCGGCCCTGC TGCACACGGC GGACGGCGGC
CTGCGCGTCC GCGACCTCAC CACCGGCGCC ACCCGCGCCA TCCCGTTCGA GGCCACCGTC
GAGCACACCC CGCACGTCGA CCGCCCCGCG GCCCGTCCGG TCGACCGGAA ATCCGGCCCG
GTCAAGGGGA TCGCGAGCCC GGTGCTGTCC CCGAACGGCC GCGAGGTCGC GTTCCGCGCG
CTCGGCGCGC TCTGGCTGCT GCCCCTGGAC GGCGAGCCTC GCGCGCTCGT GGACGACGGC
TCGTTCGCCT CCGACCCCGA CTGGCGCCCG GACGGCTCCG CCCTGGTCTA CACCAGCGAC
CGCACCGGAA CGCCCGCGCT GTGGCGGCAC GACCTGGCCA CCGGCGCCGA CACCCGCCTC
ACCGACCTCC CCGGCGCGCA GCTCACCCCC AGGATCGCCC CGGACGGCGA GCGGATCGCG
TTCCAGGACG CGGACGGCGC CACCTGGGTG CTCTCCGACG GCGTCGCCAC GCAGGTCCTG
CCCGCGCTGT TCCAACCGGG CCGCCCCACC TGGTCCCCGG ACGGCCGCAC GCTCGCGCTC
GCCGCCGTGA AACCGCTCTC ACGCCGCTAC CGCGAGGGCA CGAACCAGAT CCTCACCGTC
GCGCTCGACA CCGGCGAGGT CCGCTACGCC GAGCCGCTGC CGGGGAAGTC CCTGTCCACC
AGGGGGGACG ACGGCCCGGT GTGGTCCCCG GACGGCCGGT GGCTGGCGTT CGTCGTGGAG
AGCGCGCTGT GGGTCGTCCC GGTCGACGGG CGCGGCGCGC TCACCGGCGA CCCGCGCCGG
ATCGCGGCCG GACCGGCGGA CGCGCCGTCG TGGAGCGGCG ACTCGAAGTC GTTGCTGCAC
CTGGAGAACG GCGTCCTGGT GCGCACCGGC CTCAACGGCC GCGCCCGCCG CTCCCGCGTC
CCGCTCACCT GGTCCAGGCC CCGTGCCGAG GGCCGCAAGG TGCTGCGCGC GGGCGCGTTG
TGGGACGGCC GGGCACAAGC GTTGCGCCGC GACGCGGACG TGCTCATCAA CGGCGACCGC
GTCGAGTCCG TGCACGACCG CCGCGCCTGG CCGGGCCTGG AGGTCGTGGA CGCCTCCCGG
TTCACCGTGC TCCCCGGCCT GATCGACGCG CACAACCACT GGCACCTGCG CGGCAGGCAG
TGGGGCGACC GGCAGGGCAG GTTGTGGCTG GCCTACGGCA TCACCACCAC CCGCTCGCCC
GGCGACCCGG CCTACCAGAT GGTCGAGACC AGGGAGGCCC TGGACGCGGG CAAGCGGATC
GGCCCGCGCT ACCTGGCCAC CGGCGAGGCC GTCGACGGCA GCCGGGTCTA CTACAACTTC
ATGCGCACCA CGACCAGCCC CGAGCAGGTC GACCTGGAGC TGTCCCGGGC GATCGCGCTG
GAGTACGACC TGGTCAAGAC CTACGTCCGC CTCCCGGTCG CCTCCCAGCG TCGCGCCGTC
CAGCTCGCCC ACCGCGCCGG GCTGCCGCTC ACCTCCCACT ACCTGTACCC GGCGGTCGGG
ATCGGCATGG ACGGCATGGA GCACGTCGGC GCCACCAACC GCCTCGGCTA CTCGCACACC
AACACCCGCC TCGGCCGCGC CTACCGGGAC GTGACGGGCC TGTTCGCCGC CTCCGGCATG
TCGATCACCA CGACCCTGTT CCCGGCGGCG GTCCTGCACG GGGAGGACCG GTCCCTGGTG
CGCGATCCCA GGACCGCCGC GCTGTTCCCG CCGTGGGAGT ACGAGCGGTT CGCGCAGGAG
GCCGAGGGCT ACGCGCAGGA CACCCCGGCG AACCGGCAGA CCAGGGAGAT CCTGCGCGGC
AACGCGGAGA CGCTGCTCGC CGTGCACCGG GGCGGCGGGC TGGTGCTGGG CGGCACGGAC
GCGCCGCTGG ACAAGGTCGC GGTCGGGCTG CACCAGAACC TGCGCGGCCT GGTCGCGCAC
GGCTTCACCC CGCACGAGGC GCTCACGACG GTGACCGCCA ACCCGGCCCG CTGGCTGGGG
CTGGCCGACC GGATCGGCGT GGTGAAGCCG GGGGCGTGGG CGGACCTGGT CGCGGTGGAG
GGCGACCCGC TGCGCGACGT CACCGCCGCC GCGAACACCC GGCTCGTGGT GACCGGCGGG
GTGGTGCGCA CCCCGGAGGA GCTGATCGGG CCGTTCGCGG GCGCCCGACC GGCGTCGGCC
GGGACGACCG GGGTGGGCGC GCCGCTGCCC AGCGCGGACC CGGACCTGTT CTGGTGGCAC
GGGGAACCGG AGTGGTCGGC GCACGTGTGC CACTGA
|
|---|
| Protein sequence | MNSARAGFRR RDLLRGAAAA GGVALVGPPG LAAAQDSELS GALRRFTATE GTNITAALSP
DGRTIAIDLY TRIWLLPASG GRARPLTDPE QDATRPHFSP DGRSLVFQSY RDGNYHLWTI
GVDGRGLRRR TSGPTDHREP RFSPDGRAIA YSGDAGADGY HLWLLDLATG RTTRLTTGPN
DDGEPVFSAD GRHLVCTADG AAIDRITLDG GARTRLVQPT TGTRVLAPGL TPDGRLVHTA
FAGPTTSLVV DGRVVSADED LFGSSPQWLG AALLHTADGG LRVRDLTTGA TRAIPFEATV
EHTPHVDRPA ARPVDRKSGP VKGIASPVLS PNGREVAFRA LGALWLLPLD GEPRALVDDG
SFASDPDWRP DGSALVYTSD RTGTPALWRH DLATGADTRL TDLPGAQLTP RIAPDGERIA
FQDADGATWV LSDGVATQVL PALFQPGRPT WSPDGRTLAL AAVKPLSRRY REGTNQILTV
ALDTGEVRYA EPLPGKSLST RGDDGPVWSP DGRWLAFVVE SALWVVPVDG RGALTGDPRR
IAAGPADAPS WSGDSKSLLH LENGVLVRTG LNGRARRSRV PLTWSRPRAE GRKVLRAGAL
WDGRAQALRR DADVLINGDR VESVHDRRAW PGLEVVDASR FTVLPGLIDA HNHWHLRGRQ
WGDRQGRLWL AYGITTTRSP GDPAYQMVET REALDAGKRI GPRYLATGEA VDGSRVYYNF
MRTTTSPEQV DLELSRAIAL EYDLVKTYVR LPVASQRRAV QLAHRAGLPL TSHYLYPAVG
IGMDGMEHVG ATNRLGYSHT NTRLGRAYRD VTGLFAASGM SITTTLFPAA VLHGEDRSLV
RDPRTAALFP PWEYERFAQE AEGYAQDTPA NRQTREILRG NAETLLAVHR GGGLVLGGTD
APLDKVAVGL HQNLRGLVAH GFTPHEALTT VTANPARWLG LADRIGVVKP GAWADLVAVE
GDPLRDVTAA ANTRLVVTGG VVRTPEELIG PFAGARPASA GTTGVGAPLP SADPDLFWWH
GEPEWSAHVC H
|
|---|
| |