| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4828 |
|---|
| Symbol | |
|---|
| ID | 8329026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 5747669 |
|---|
| End bp | 5749399 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644945269 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003102501 |
|---|
| Protein GI | 256378841 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGTGC AGGTGAATCC GGTGGAGGCC GGGCGGGCGC GTGGGGCGCG CACCGCCGGG
GTCGCCGCCG CGGCCACGGT GGTGACGCTC GCGGGCGGGC TGCTGCTCTG GCCGTCCGCT
CAACCCGCGA ACGCGGCGGT GGGCGCGGGG ACCTACACCG TGACCAACGG TGGCAGCGGG
TTGTGCCTCG GTTCGCCCGG TGCGGCGGCG GATGCGCAGC TGCAACTGCA GGCGTGCACG
GGCGCCGACG GTCAGAAGTG GGCGCTGACG TCGGTCAGCG GCGGGTTCCG GATCACCTCG
GTGTCCACCG GGCTGTGCGT CGGGGTGGCG GGGGCGGCCA CGAGCGCGGG CAAGGCCATC
CAGCAGCAGT CGTGCTCCGG TGGGGCCGGG CAGGTGTGGT CGCTGACCGA GAGCGGATCG
AACCACCGGG TGGTCAACCC GAACGCCGAC AAGTGCATGA ACACCAAGGA CAACGCCACG
ACGGCGGGCG CCGCGGTGCA AACGAACTCG TGCGACAGCG CGACCTCCAA GCAGTGGGGC
TTCACCCCGG CGGGTGGCGG GCAGCCGACG ACCACCACCA CGAGTGGCGG TAGCGCGACC
ACGACCACCA AGCCGCCGGT GACGACCACG ACGCCGCCGC CGAGCGGTTC GGCGATCTAC
GCCTCGCCCA GCGGGACCGA CGGGGCTGCG GGCACCGAGG CCGCGCCGAC GACGCTCACC
TCGGCGATCT CGCGCGTCGC GTCCGGCGGG ACGATCTACC TGCGCGGTGG CACGTACCGG
TTCTCCAGCA CGGTGTCCAT CCCGCAGGGC CGCAACGGCA CGGCGAGCAA GCGCACCCAG
CTGTTCGCCT ACTCGGGTGA GACCCCAGTG CTGAACTTCT CGGCGCAGAG CGAGGACCCG
GCGAACCGGG GTCTGGCGCT GAACGCGTCG TACTGGCACG TGCGCGGCAT CGTGGTGGAG
CGCGCCGGTG ACAACGGCAT CTTCATCAGC GGCAGCAACA ACGTCGTCGA GCGGACCGTG
ACCCGGTTCA ACCGGGACAG CGGCCTCCAG CTGTCGCGGG AGCTGTCCAG CACGCCGAAG
GACCAGTGGC CGGCGAACAA CCTGATCCTC AGCTCCGAGT CGCACGACAA CGCGGACTCG
GACGGCGAGG ACGCCGACGG GTTCGCCGCG AAGCTGACCT CGGGGCCGGG CAACGTGTTC
CGCTACACCG TGTCGCACAA CAACATCGAC GACGGCTGGG ACCTCTACAC CAAGACCGAC
ACCGGTCCCA TCGGCGCGGT GACGATCGAG GACTCGCTGG CGTACGGCAA CGGCACGCTG
AGCGACGGCT CGCAGGCGGG CAACGGCGAC CGCAACGGCT TCAAGCTGGG CGGTGAGGAC
ATCGCGGTGA ACCACGTGGT CCAGCGCACC ATCGCCTACG ACAACGGCAA GCACGGCTTC
ACCTACAACC GCAACCTCGG CAAGATCACC ATGTCGAACA ACGTGAGCGT CGACAGCACC
GAGCGGAACT TCAACTTCGA CGGTGGCACG TCGGTGTTCC GCAACAACGT GTCCTGCTAC
AGCAGCGGTG GCACGAAGGA CAAGACGATC GGCGACGTGG ACTCGTCCAA CCAGTTCTGG
TCGGGGTCGA ACGGCTCGAA GTGCTCCGCC TACTCCGGCA AGCTGACCTG GTCGTTCGCC
TCGGACGGGC GGCTGGTCGT GAGCTTCGGC GGCAAGGTGG TCAACCCGTA G
|
|---|
| Protein sequence | MGVQVNPVEA GRARGARTAG VAAAATVVTL AGGLLLWPSA QPANAAVGAG TYTVTNGGSG
LCLGSPGAAA DAQLQLQACT GADGQKWALT SVSGGFRITS VSTGLCVGVA GAATSAGKAI
QQQSCSGGAG QVWSLTESGS NHRVVNPNAD KCMNTKDNAT TAGAAVQTNS CDSATSKQWG
FTPAGGGQPT TTTTSGGSAT TTTKPPVTTT TPPPSGSAIY ASPSGTDGAA GTEAAPTTLT
SAISRVASGG TIYLRGGTYR FSSTVSIPQG RNGTASKRTQ LFAYSGETPV LNFSAQSEDP
ANRGLALNAS YWHVRGIVVE RAGDNGIFIS GSNNVVERTV TRFNRDSGLQ LSRELSSTPK
DQWPANNLIL SSESHDNADS DGEDADGFAA KLTSGPGNVF RYTVSHNNID DGWDLYTKTD
TGPIGAVTIE DSLAYGNGTL SDGSQAGNGD RNGFKLGGED IAVNHVVQRT IAYDNGKHGF
TYNRNLGKIT MSNNVSVDST ERNFNFDGGT SVFRNNVSCY SSGGTKDKTI GDVDSSNQFW
SGSNGSKCSA YSGKLTWSFA SDGRLVVSFG GKVVNP
|
|---|
| |