Gene Amir_4390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4390 
Symbol 
ID8328587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp5189293 
End bp5190555 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content76% 
IMG OID644944852 
Productpeptidase S26B, signal peptidase 
Protein accessionYP_003102085 
Protein GI256378425 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0681] Signal peptidase I 
TIGRFAM ID[TIGR02228] signal peptidase I, archaeal type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGCCCT GGTGGCGCCT GGTGGCGCGG TGCGCCCTGG CGTTCACCGG CGCCGTCGCG 
CTCACCCTCG CGCTGTGCGC GTTCGCCCCG GTGCTGTGGG GCTGGCGGCC GGTGGTGGTC
ACCTCCGGGT CGATGGAACC GCTCGTGCGG CCCGGCGACG TGGTGCTGCT CGACCCTACC
CCCGACCGCG AACCGCTGGT CGGGGACGTC GTCGTCTACT CCCGGTCCGA CGCGCCGTCG
GTGACGCACC GGGTCGTCGG CCGCGACGAC GACGGCCGCT ACCGCACCAG GGGCGACGCC
AACCCCACCC CGGACGCGGC GTCCGTCGCG CCCGAGGACG TGCTGGGTCG GGTGCGCGGG
CTGGTGCCGG GGCTCGGCGC GCCCGCGCTG TTCCTGCACC GGCACCCGTC CGCCGCCGTC
CCGCTGGCCG TGCTCGGCGG CGCGGGGCTG CTCGTGCTGC TGCTCTCCCG CCGCCGACCG
CGCGCCGCCG CTGCCGCCGT GCTGCTGGTC CCCGCGCTCG CGGTCACCAC CGGCGGGGTC
GTGGGCCGCA CCGAGGCGGA GTTCTCCGCG ACCACCGCCG TGCCCGCGAC CGTCGAGACG
GTCTCCCGCT TCTACCCGCA GAAGGTGCTC GCCGCGAACC CCGTCAGCTA CTGGCGGCTC
GGCGAGAAAT CCGGGAACGC CCGCGCCGAC GAGCGCGGCG CGAACCCCCT GACCTGCGTC
GGGGCCACCG GCGGCGCGCC GGGCGCGCGC CCGCCCGACT CGGACACCGC CACCACCCTG
CCCACCGCGT CGGCCCACTG CGCGGCGGGC AGCGGCGCGG CGCTGAGCTT CACCGGGCCG
TTCACGGTGA TCGTCTGGAC CCGCTCCACG GCGTTCCCCC CGACCCCGCA CGGCCGCCTC
GTCGCCAAGT ACGGCGGCGG GACCGGGCAG ATCAACTACC TGCTGTCCTG GAACGACGCC
ACGACGGCCA TGCGCGCGCT GCTGGACACC GGGAGCGGCC GGTACACCGT GGTCAAGCCG
ATGCCGTCGG ACACCGCCTG GCACGAGGTG GCGATGACCT GGGACGGGGC CGGACTGCGG
CTGTACCTGG ACGGGCAGCC CGCGGGCTCC ACCGCGACGG TGGGCACCCC GGTGACCACG
CCGAAGCCGT TCACGCTCGG GTACACCGAC GCGGACTCCG TGGTGGGGGA CGTGGACGAG
GTGTCGGTGT TCGCGCGGGC GCTGACCGAC GCGGAGATCG CCGACCTGCA CGCCGCGTCC
TGA
 
Protein sequence
MKPWWRLVAR CALAFTGAVA LTLALCAFAP VLWGWRPVVV TSGSMEPLVR PGDVVLLDPT 
PDREPLVGDV VVYSRSDAPS VTHRVVGRDD DGRYRTRGDA NPTPDAASVA PEDVLGRVRG
LVPGLGAPAL FLHRHPSAAV PLAVLGGAGL LVLLLSRRRP RAAAAAVLLV PALAVTTGGV
VGRTEAEFSA TTAVPATVET VSRFYPQKVL AANPVSYWRL GEKSGNARAD ERGANPLTCV
GATGGAPGAR PPDSDTATTL PTASAHCAAG SGAALSFTGP FTVIVWTRST AFPPTPHGRL
VAKYGGGTGQ INYLLSWNDA TTAMRALLDT GSGRYTVVKP MPSDTAWHEV AMTWDGAGLR
LYLDGQPAGS TATVGTPVTT PKPFTLGYTD ADSVVGDVDE VSVFARALTD AEIADLHAAS