| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4345 |
|---|
| Symbol | |
|---|
| ID | 8328542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 5112684 |
|---|
| End bp | 5113904 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644944809 |
|---|
| Product | drug resistance transporter, Bcr/CflA subfamily |
|---|
| Protein accession | YP_003102042 |
|---|
| Protein GI | 256378382 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.809262 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCATAA CCTCCCCCGA CCGCACAGCC ACGCCGACCC CCGCCCTCAG CCGGGGCCGC
CGCGCCTGGC TGGCCCTCGT GCTCGGCTCG CTCAGCGCCT TCGGCCCGCT CACGATCGAC
ATGTACCTCC CCGCCATGCC CGACATGGCC CGCGAGCTGG CCACCAGCGC CTCCGCCGTC
CAGCTCACCC TCACCGTCTT CGTGATCGGC CTCGCGGTCG GCCAGGTCCT GGTCGGCCCG
GTCTCCGACG CGTGGGGCCG TCGCCGTCCG CTGCTCGCGG GCCTCGCGCT CTACGCGGCA
GGCTCCCTGC TCTGCGCGCT GGCCCCGGAC ATCACCTGGC TGCTGACCGG CCGCGTCGTG
CAGTCCCTCG GCGCCGCGGC GGGCGTGGTG CTGTCACGGG CGATCGTGCG CGACCTGTTC
GACGGCGTCG CGATGACCCG CTTCTTCTCC ACCCTCATGC TGGTCAACGG CGTCGCCCCG
ATCGTCGCCC CGGTGATCGG CGGGCAGCTT CTCGTCGTCG CGCGCTGGCA GGCCGTCTTC
CACGTCCTGA CCGGCCTCGG CGTGCTGCTG CTCGTGGCCG TCCTGCTCGC CCTCCCCGAG
TCGCTGCCCG CCGAGCGCCG CAACGCCCGC CCGCGCGACA CCCTGCGCAG CCTCGGCGCG
CTGATCGCCG ACTGGAGCTA CCTGCGCCAC GTGCTCGCGG CGGCACTGGT GTTCGCCGCG
GTGTTCGCCT ACATCTCCGG CTCCTCGTTC GTGCTCCAGG ACGGCTACGG GCTCAGCGCG
CAGCAGTACA GCCTCGTCTT CGGCCTCAAC GGGGTCGGGA CCGTGCTCCT GGGCGCGGGC
AACGGGCTCG TCGTCGGCAA GCTGGCCTCC GAGCGGACCC TGCTGCTCGC CGGGACCGCC
GTGACCGCCG TCGCCGCGCT CGGCGCGCTG GTCGGCGCGC TCGCCGGGTG GCCGCTGCCG
TGGCTGCTGG TGTGCCTGTT CCTGGTCGTG GCGATGATGG GCGTGGTGCT GGCCAACGCG
ACCTCCCTCG CCCTCGCCGG GCACGGGTCG GCGGCGGGCG CGGCGTCCTC GCTGCAGGGG
CTGCTCCAGT TCCTCGTCGC CGGGATCGCG GCCTCCGCGA TGAGCTGGGG CGGTCAGGCG
ACGGCGGTGT CGATGGGCGC GACGATGGTG GCTTGCTCGG TCGGCGCGCT GGCGCTGCTG
GTGGTCCGCC GCAGCGCCTG A
|
|---|
| Protein sequence | MSITSPDRTA TPTPALSRGR RAWLALVLGS LSAFGPLTID MYLPAMPDMA RELATSASAV
QLTLTVFVIG LAVGQVLVGP VSDAWGRRRP LLAGLALYAA GSLLCALAPD ITWLLTGRVV
QSLGAAAGVV LSRAIVRDLF DGVAMTRFFS TLMLVNGVAP IVAPVIGGQL LVVARWQAVF
HVLTGLGVLL LVAVLLALPE SLPAERRNAR PRDTLRSLGA LIADWSYLRH VLAAALVFAA
VFAYISGSSF VLQDGYGLSA QQYSLVFGLN GVGTVLLGAG NGLVVGKLAS ERTLLLAGTA
VTAVAALGAL VGALAGWPLP WLLVCLFLVV AMMGVVLANA TSLALAGHGS AAGAASSLQG
LLQFLVAGIA ASAMSWGGQA TAVSMGATMV ACSVGALALL VVRRSA
|
|---|
| |