| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4247 |
|---|
| Symbol | |
|---|
| ID | 8328440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 5004188 |
|---|
| End bp | 5005015 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644944711 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003101948 |
|---|
| Protein GI | 256378288 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.286455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGT GGTTCGTCAC CGGGTCGTCC AGGGGCATCG GCCGGGAGCT GGTCGAGCGC
GTGCTGGCGC GCGGGGACCG GGTCGCCGCG ACCCTGCGCG CGCCGAAGCG GTTGGACGAC
CTCGCCGAGC GCCACGGCGA CCGGCTGTGG CGGCGTCGGC TGGACGTCAC CGACACCGCC
GAGGTCGAGC GCGCGCTCGC CGAGGCCGTC GCCGAGCTGG GGCGGCTCGA CGTCGTCGTG
TCCAACGCGG GCCACGGGGT GTTCGGCGCG GCCGAGGACC TGAGCGATCA GCAGGTGGAG
GACGCCATCG CCACCAACCT GACCGCGTCG ATCCAGCTCG CCCGGCGCGC CGTCCCCGTG
CTGCGGGCGC AGGGCGGCGG GACGCTCGTG CAGCTGTCCA GCATGGGCGG GCACCTCACG
TTCCCCGGCT TCGCGATCTA CCACGCCACC AAGTGGGGCG TGGAGGGCTA CTTCGAGGCG
CTGGCGCGCG AGGTCGAGCC GTTCGGGATC AGGACCGTCC TGGTCGAGCC GGGCATGGTG
CGGACCTCGT TCTACGACGC GGCCACCAGG GTCCCGGCCA GCGAGCCGTA CCGGGGCGGG
GTCGCCGACC AGGAGCCGCT GCCGGTGGAG CGGATGCCGG GCAGCCAGTC CGGGGTGGCG
CACGCGGTGA TCGAGGCCGC GCTGTCCGAC GACCCGCCGC TGCGGCTGCT GCTCAACTCC
GACGCGCACG AACTGGTCAC CGGGGCGGTC CGGGAGCGGC TGGCGGCGTT CGAGGCGCGC
AGGGAGGCGG CGTTCGCGGC CGACGCCGAG CAGCCCCGCG CATACTGA
|
|---|
| Protein sequence | MTTWFVTGSS RGIGRELVER VLARGDRVAA TLRAPKRLDD LAERHGDRLW RRRLDVTDTA
EVERALAEAV AELGRLDVVV SNAGHGVFGA AEDLSDQQVE DAIATNLTAS IQLARRAVPV
LRAQGGGTLV QLSSMGGHLT FPGFAIYHAT KWGVEGYFEA LAREVEPFGI RTVLVEPGMV
RTSFYDAATR VPASEPYRGG VADQEPLPVE RMPGSQSGVA HAVIEAALSD DPPLRLLLNS
DAHELVTGAV RERLAAFEAR REAAFAADAE QPRAY
|
|---|
| |