| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4078 |
|---|
| Symbol | |
|---|
| ID | 8328271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 4789499 |
|---|
| End bp | 4790074 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644944543 |
|---|
| Product | alkylhydroperoxidase like protein, AhpD family |
|---|
| Protein accession | YP_003101780 |
|---|
| Protein GI | 256378120 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.201946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCACA TCGATCTGGA AGATGTGGAC GAGAGCCTGT TCCCCGGCAT CACCGGGCTG
ATGCGGTACC GGCCCGAGAC GGCCGGACCG CTCGGCGAGC TGGCCGAAGT CCTGCTCCGC
GCACCGAACT CGCTCTCCCC GGGGGAGCGG GAGCTGATCG CGGCCTACGT GTCGGGCCGC
AACCGCTGCA CGTTCTGCTG CGACTCGCAC GCCGCGTTCG CCGCCGCCCA GCTGGACGAG
GGCACGGCGC TCGTGGACCG GGTCCTGGCC GACCTGGAGC TCGCGCCGGT CCCGGAGAAG
CTGCGCGCGC TGCTGCGGAT CGCGGGCGCG GTGCAGGAGT CCGGTCGCGC GGTCACCCCC
GACCTGGTGC GGCGGGCGCG CGAGCTGGGC GCGACGGAGG TGGAGATCCA CGACACCGTG
CTGATCGCCG CCGCGTTCTG CATGTTCAAC CGGTACGTCG ACGGCCTGGG CACGCTCGTC
GCCGACGACC CGGAGCACTA CGAGGTGGCG GCGCGCCGCA TCGTGGCCGA GGGCTACCTC
GGCCTCGGCC GGGGAGCCAA CGGCTCGCAG ACCTGA
|
|---|
| Protein sequence | MAHIDLEDVD ESLFPGITGL MRYRPETAGP LGELAEVLLR APNSLSPGER ELIAAYVSGR
NRCTFCCDSH AAFAAAQLDE GTALVDRVLA DLELAPVPEK LRALLRIAGA VQESGRAVTP
DLVRRARELG ATEVEIHDTV LIAAAFCMFN RYVDGLGTLV ADDPEHYEVA ARRIVAEGYL
GLGRGANGSQ T
|
|---|
| |