| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3809 |
|---|
| Symbol | |
|---|
| ID | 8328001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 4468230 |
|---|
| End bp | 4469708 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644944296 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_003101534 |
|---|
| Protein GI | 256377874 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGCCG TGGTCAGGGG TCGCACCGAC CGGGTCGTCG TGGTCGGCGC GGGACTCGCG
GGGTTGTCCG CGGCGCTGCA CCTGCGGGGC GCCGGGCACG AGGTGACCGT GGTGGAGCGC
CTGGCGCACC CCGGCGGTCT GGCGGGCAGG CTGGACGTGT CGGGCTACCG GATCGACCCC
GGACCGACCG TGCTGACCAT GCCCGAGCTG ATCGACGAGG CGCTCGGCGC GGTCGGTCGC
AAGCTCGACG AGCTGGTGGA GCTGCTGCCG CTGCACCCGG CGTACCGGGC GCGCTTCGCC
GACGGCACGA GCCTGGACGT GCACACCGAG GCCGAGGCCA TGCACCGGTC GATCACCGAC
TTCGCCGGTC CCGCCGAGGC CGACGGCTAC CTGAGGCTGC GGGACTGGCT GGGCAAGCTC
TACGAGGTGG AGCGCGACCG GTTCATCGGG GCGAACTTCG ACTCCCCGCT CGACCTGGTC
GGCCCGGACC TGGTGCGGCT GGCCGCGCTC GGCGGGTTCT CCTCGCTGGA GCGCGGAGTG
GGCAAGCACC TGGGCGACGA GCGGCTGCGC AGGGCGTTCA CCTTCCAGGC GCTGTACGCG
GGCGTCGCGC CCCGGCGGGC GCTCGGCGCG TACGGCGTCA TCGCCTACAT GGACACCATC
GCGGGCGTGT CGTTCCCGCG CGGCGGGATG CGCGCGGTGC CGCAGGCCAT GGCGGACGCC
GCCGAGGGCG CCGGGGTCCG GTTCCACTAC GGCACGGCCG CGCTGCGCCT GGAGCGCGCG
GGCGGGCGGG TGACCGCCGT GGTCACCGAG GGCGAGCGGC TCCCGTGCGA CGCGGTCGTG
CTGGCCGCGG GGCCCGTGCT CAGCGCCGAG CTGCTGGCGG ACGTGCCGCG CCGCCCGGTG
CCCACGCGCT GGTCGCCGTC GGCGGTGGTC GCGCACCTGG CGGCCGACGT GGTCACGGAG
GACCTGGCGC ACCACACCAT CTCGTTCGGG AACGCCTGGA ACGGCACGTT CGACGAGATC
GTGCGCGACG GCAAGCTCAT GTCCGACCCG TCGCTGCTGC TCACGACGCC CACCCTCACC
GACCCGAGCC TCGCGCCGGA GGGCAGGCAC CTGCACTACC TGCTGGCGCC CTGCCCGAAC
CTGGACCGCG CGCCGCTGCG CTGGGACGTG CTCGGCCCCC GGTACGCGGA GGAGCTGGTG
GAGGAGGTCG TCAAGCGCAA GCTCGTGGGC GCGGCCTCGG ACGTGGAGCT GCTGTCGCTG
AGCACCCCGG ACGACTGGGC GCGCGGCGGC CAGCCCGCCG GGACGCCGTT CTCGGCGGCG
CACACGTTCC TGCAGACCGG GCCGTTCCGG CAGCGCAACC TGCCGCGCCG CAGCGGCAAT
GTGGTGCTCG CCGGAAGTGG GACCACCCCT GGTGTCGGAA TTCCGCCAGT GGTGATTTCC
GGTCGGCTGG CGGCGGCCCG TCTGCGGGCC CCGCAGTAA
|
|---|
| Protein sequence | MVAVVRGRTD RVVVVGAGLA GLSAALHLRG AGHEVTVVER LAHPGGLAGR LDVSGYRIDP
GPTVLTMPEL IDEALGAVGR KLDELVELLP LHPAYRARFA DGTSLDVHTE AEAMHRSITD
FAGPAEADGY LRLRDWLGKL YEVERDRFIG ANFDSPLDLV GPDLVRLAAL GGFSSLERGV
GKHLGDERLR RAFTFQALYA GVAPRRALGA YGVIAYMDTI AGVSFPRGGM RAVPQAMADA
AEGAGVRFHY GTAALRLERA GGRVTAVVTE GERLPCDAVV LAAGPVLSAE LLADVPRRPV
PTRWSPSAVV AHLAADVVTE DLAHHTISFG NAWNGTFDEI VRDGKLMSDP SLLLTTPTLT
DPSLAPEGRH LHYLLAPCPN LDRAPLRWDV LGPRYAEELV EEVVKRKLVG AASDVELLSL
STPDDWARGG QPAGTPFSAA HTFLQTGPFR QRNLPRRSGN VVLAGSGTTP GVGIPPVVIS
GRLAAARLRA PQ
|
|---|
| |