| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3178 |
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| Symbol | |
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| ID | 8327368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 3668122 |
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| End bp | 3671346 |
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| Gene Length | 3225 bp |
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| Protein Length | 1074 aa |
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| Translation table | 11 |
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| GC content | 80% |
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| IMG OID | 644943695 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003100935 |
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| Protein GI | 256377275 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00421599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGCTGG TGGACCGCGA CGGGCAGTGC GAGGCGCTGG CCGCCCTGCT GGAGGGCGCG
GCGGGCGGGT GCGGGGGCGC GGTGCTGCTC AGGGGCGCGC CTGGGCACGG GAAGACCGCG
CTGCTGGGGC GCCTGGTCGC GCTGGCCGAG GCGGCGGGGT TCCGGTGCCT GGTGGTCGAG
GCGGACGCGC TGCCCGAGGT GGCTGAGGTC GCGGCGGAGG TCGCTGATGG CGGGGGCGCC
CTGCTGGTGG CCGTGGACGA CGCCGGGGGG GCCGACGTGG GCGCGCTGCT CGACCTGGCG
GCGTGGGCCA GACGCGCGCC CGCCGTGCTC GCGCTCACCG ACCTGCCACG CCTGCCCGAC
GACGACCCGC TGGGCGCCGT GGCGCGCACG CCGGGCGCGC TCGTGCTCGA CCTCCCGCCG
CTGCGGGCGG AGACCACCGC CGCGCTGCTC GACGGGACCC CGTGGCCGGT GACCGGGGGG
AACCCCGCGC TGGTGCGCGG GCTCGCCCGC GACCTCGCGG CGGGGGAGGC GGGACCGGGG
GCCGCTTACC GGGCCGCCCT CGCCGGGGTG CTCGACCGCT GCGGCGCCGA GGTGGCCGCT
GTCGCGCACG CCTCCGCCGT GCTCGCCGTG CTCCCCGCCG GGCCCGCCGC CGCGCTTCCC
GCCGGGCCCG CCGCCGTGCT CCCCGCCGGG CCCACCGCCG CGCTTCCCGG CGGGCTGCTT
CCTGGTGCCG CGCTTCCTCA CGGGGCCCTT CCCGCTGCTG CGCGCCCCGG CGTGGTGTGC
CCAGACACCG CGCCTCCCGG CGGGGCGCTT CCCGACGGCG GGGCGCGATC GCTCGCCTCT
GGCGCGGCGG GCGTCCGGCA GGGGGGAGTG GTGCCTCTCG CGCCCGGTCG GACCGGTGCC
TCGCCGGGTG GCGCGGAGCC GCTCCTGCTC GGCCCGGCGT CTGGGGTGGG GGGTGATCCC
GCCGGTGGGG ACGGGACCTC CGCGTCCGGC CGGATGGCTG CGGACCACGT CGTTCCCGGT
GGTGCCCGAC TCCGCGCGCC CTCGGGTCCC GCCGCACCCG TCGACCTGGT CGCCGACCTG
CTCGGCCGTG CTCCCGCCTC CGTCGCCGAC GCCCGCGCCC GCCTCGTGGG AGCCGGGCTC
GACCGGGCCG ATCCCGCCGC TGTGCTGGAC GTGCTGCCCG CCGCCCGGCG CGCCGAGCTG
CACCTGCGCG CCGCGCGGAC GTTGCACGAG CGCGGTGAGT CGCCCGCCTC CGTCGCCGAC
CACCTCGTCA CCGCCGGCCT GCCTGCGCCT GCCTGGGCCG TCGACGTGCT CGTCGCCGCC
GCCGACCACG CGCTCGCCGC CGACGACGTG CCCACCGCCG TCGACCGGCT CGCCGCCGCC
CACCGCCGGG ACGAGGCAGA CCCACCGCGG GGCGTCCACC CGCGCGGAGT CCCGGACCCG
GCCGTCGCCG CCCGCCGGTG CGGGTGCGCG GACCGGACGG CCGCGCCCGC CGACCGCCGC
ACCTCTCCCG AGCCCACGGC CCTGTCCGAG CCCGCAGCCG TCGTCGGGCC CGCGCTCACC
GCCCGCCTCG CCCGCGCGCG CTGGCAGCTC AACCCGGCTG CCGCGCTGTG CCACCTCGAC
CCGCTCGCCG ACGCCCTCGC CGCCGACCCC GCCGCGCTCG CCCCCCGTGA CGCCGCCGCG
CTGGTGCGCC AGCTCGTCTG GCACGGGCGC ACCGCCGCCG CCGGGCGGGT GCTCGCCGCG
CTGCGCGCCC GCGAGCACGC CGCCGAGCTG CCCGACCTGG AGACCTGGCT CTCCCTCGCC
TGCCCGCCAC TCGCCGCCTC CCGCCGCACC GCCTTCTCCC GCACCGCCTT CTCCCACACC
GCCTTCTCCC ACAGCGCTGC CCGCCACGGC AGCGCCCTCC CCCCCAACGC TCTCCACCCC
GGCGCCCTCC ACGCCAACGC CCCGCACACC TCCGCTTCTC ACACCGCTGC CCACCAGCGC
GGCACCCCCC ACCCCGCGGC CCTCAACCCC ACCACCCCGC CCCCGAGCCG CGTCGACCCA
TGGTTGCGCG AGGCCGCCAG CCTGGTCGGC GGGTTCGTCC TCGGGGACCA GCGCCGAGCC
GCCGCCGAGG CCGCGCACTA CCTGCGCCAC GCCCAGCTCA GCCACACCTC CCCCTGGTCC
GAGGAACCCG CGCTGCTCGC GCTGCTCGCC CTGGTGCGCG CCGACCGCGC CGTCGAGGCC
GACCGGGCCT GCGCGCGGCT GCTCGACGAG GCGCGCTCCC GGCGCGCGCC CACCTGGGTC
GCCTCCTTCG CCGCCGCCGC CTCGGTGATC GCGCTGCGGC TCGGCGACCT CGCGGGCGCA
GCCGGGCACG CCCGCGCCGC GCTCGACGCC GTCCCCGCGC ACGGCTGGGG CGCGGGCGTC
GGGCTGCCGC TGGGCTCGCT GATCCTCGCC GACACCCTGC GCGGGCGGCG GCGGGAGGCC
GGGCGGCACG TCACCGCGCC CGTGCCGGAC GCCCTCTTCG ACGGCCCCGC CGCCCCGCAC
TACCTGCACG CGCGCGGCCA CCACCACCTC GCGTCCGGGC GGGACCACGC GGCGCTCGCC
GACTTCCTGG CGTGCGGCGA CCTCCTGCGC TCCTGGAGCC TCGACCTGCC GGGCCTCGCG
CCGTGGCGCA CCGGGGCCGC CGAGGCGTGG ACCCGCCTGG GCAACCACGA CCGAGCCCGG
CGGCTGGTGT TCGACCAGCT CGCCACGACC GGCGCCGACG CGGGCCGCCC CAGGGCGCTG
GCGCTGCGCG CGCTCGCCTC GCTCAGCCCG CCGACCCGCC GCCCGCACCT GCTCGCCGAG
GCCGCCGACG CCCTGGAGCG CTGCGGCGAC CGCTACGAGC TGGCCGCCAC CCTCGCCTGC
CTCGGCGCGG CGCACCACGC CCTCGGCGAC CACCGCCGCG CCCGCGCCGT GCTGCGCAGG
GCCTGGCACC TGGCCAGGGC GTGCGGCGCG CGACCGCTGT GCGCGCGCCT GGAACCGGAC
GCGGCCGACC CCGTCGCGCA CGACACCAGC GGCCTCACCG GCTCCGAGCG CAAGGTCGCC
GCGCTGGCCG TCACCGGCCT CACCAACCGG CAGATCGCCG AGAAGCTGTT CGTCACCCCG
AGCACCGTCG AGCAGCACCT GACCAGGGTG TTCCGCAAGC TGCGCGTCAC CCACCGCACC
GACCTGCCCA CCACCCTGCA CGCCGACCTG ACCACCCCCG CCTGA
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| Protein sequence | MRLVDRDGQC EALAALLEGA AGGCGGAVLL RGAPGHGKTA LLGRLVALAE AAGFRCLVVE
ADALPEVAEV AAEVADGGGA LLVAVDDAGG ADVGALLDLA AWARRAPAVL ALTDLPRLPD
DDPLGAVART PGALVLDLPP LRAETTAALL DGTPWPVTGG NPALVRGLAR DLAAGEAGPG
AAYRAALAGV LDRCGAEVAA VAHASAVLAV LPAGPAAALP AGPAAVLPAG PTAALPGGLL
PGAALPHGAL PAAARPGVVC PDTAPPGGAL PDGGARSLAS GAAGVRQGGV VPLAPGRTGA
SPGGAEPLLL GPASGVGGDP AGGDGTSASG RMAADHVVPG GARLRAPSGP AAPVDLVADL
LGRAPASVAD ARARLVGAGL DRADPAAVLD VLPAARRAEL HLRAARTLHE RGESPASVAD
HLVTAGLPAP AWAVDVLVAA ADHALAADDV PTAVDRLAAA HRRDEADPPR GVHPRGVPDP
AVAARRCGCA DRTAAPADRR TSPEPTALSE PAAVVGPALT ARLARARWQL NPAAALCHLD
PLADALAADP AALAPRDAAA LVRQLVWHGR TAAAGRVLAA LRAREHAAEL PDLETWLSLA
CPPLAASRRT AFSRTAFSHT AFSHSAARHG SALPPNALHP GALHANAPHT SASHTAAHQR
GTPHPAALNP TTPPPSRVDP WLREAASLVG GFVLGDQRRA AAEAAHYLRH AQLSHTSPWS
EEPALLALLA LVRADRAVEA DRACARLLDE ARSRRAPTWV ASFAAAASVI ALRLGDLAGA
AGHARAALDA VPAHGWGAGV GLPLGSLILA DTLRGRRREA GRHVTAPVPD ALFDGPAAPH
YLHARGHHHL ASGRDHAALA DFLACGDLLR SWSLDLPGLA PWRTGAAEAW TRLGNHDRAR
RLVFDQLATT GADAGRPRAL ALRALASLSP PTRRPHLLAE AADALERCGD RYELAATLAC
LGAAHHALGD HRRARAVLRR AWHLARACGA RPLCARLEPD AADPVAHDTS GLTGSERKVA
ALAVTGLTNR QIAEKLFVTP STVEQHLTRV FRKLRVTHRT DLPTTLHADL TTPA
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