Gene Amir_3001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3001 
Symbol 
ID8327191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp3467421 
End bp3468044 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content76% 
IMG OID644943527 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003100767 
Protein GI256377107 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.145736 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTCCAGT CGCACCCCCG TCGCCGCAGC GCGGCAGCGC ACCGCGCCAT CCTGGAGGCG 
GTGCGCGACC TGCTGCTGGA GTCCGGCTAC GAGCGGCTGT CCATGGACGG CATCGCGGCG 
CGCGCGGGCG TGGGCAAGCA GACCCTCTAC CGCTGGTGGC CGTCCAAGGC GGCGGTGGTG 
GCCGAGGCGA CCGTCGCCGG GCTGGTGTGG AACGGCGGCG GCGAGGTCCC CGAGACCGGC 
GACGTGGCCG TCGACCTGCG CGCCTGGCTG ACCGTCCTGG TGGAGTCCAC GGCGGAGCGG 
GCGTCGCTGG TCCGAGCCCT CATCTCGGCC TCCGCGGACG ACCGGGGCGA GGCCCGCCGC 
CTCTACCTGC GCTTCACCGG CCCCCACCGC GACGCCGTCC TCGCCCGCCT GCGCCGCGGC 
GTGGACTCCG GCCAGGTGCG CCCCGACGCG GACCTGGACG CGGTCGCCGA CGCCTGCGTG 
GGCACCCTGC TCTTCCAGGT CCTCACCGAC AACGAGAACC ACTCGGCGTC CCGCCTGGAC 
GGCCTCCTGC GCCTGCTCCT ACCGGGCCTC CTGGTCCACC CCCGGACCAC TGGCGCCCCC 
GAACCACCCG GCGACCACCA CTGA
 
Protein sequence
MVQSHPRRRS AAAHRAILEA VRDLLLESGY ERLSMDGIAA RAGVGKQTLY RWWPSKAAVV 
AEATVAGLVW NGGGEVPETG DVAVDLRAWL TVLVESTAER ASLVRALISA SADDRGEARR 
LYLRFTGPHR DAVLARLRRG VDSGQVRPDA DLDAVADACV GTLLFQVLTD NENHSASRLD 
GLLRLLLPGL LVHPRTTGAP EPPGDHH