Gene Amir_1970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1970 
Symbol 
ID8326155 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp2180087 
End bp2182594 
Gene Length2508 bp 
Protein Length835 aa 
Translation table11 
GC content79% 
IMG OID644942519 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003099764 
Protein GI256376104 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000157383 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCTCG GACGCGACCG GCAGCGCGTC GCCGTGGACG CACTGCTCGA CCACGCCCGC 
GCGGGCCGTG GGGGAGCTCT CGTGCTGCGC GGCGGTCCCG GCACCGGCAA GACCGCGCTG
CTCCGCGCCG CCCGCCGCGC CGCCGCCGAC TTCGCCGACG ACCCCCGCCT CGTCCTCCTC
TGCGTGGACG ACGCGCACCT GCTCGACCTC TCCGCCCTCC TCACCCTCCT CCCCGACCTC
ACCTCCGAAC CCGTCGCCGT CCTCCTCGCC TGCGAGACCG ACCTCCCCCA CCTCCCCAGC
GTCGAGCTCA CCCCCCTCAC CCACCCCGAC TCCCTGCGCG TCCTCCACGA CCTCCGCCCC
GGCCTCCCCG CCGACCTGGC CGCCGACCTC GCCCACCTCG CCTGCGGCAA CCCCCTGGCC
CTGGTCGAAC TAGCCGCCGC CCTCACCGCC GAGCACCTCG GCGGCACCGC CCCCGCCCCC
ACCGCCCTCC CCGCCGACAG CCTCCTCCGC TCCCGCCTGC GCGCCCGCTT CCACGCCCTC
TCCCCCCGAG CCCGCACCGC CGCCGCCCTG TCCCTGGTCG ACCCGGACCT CGACCCCGAC
ACCCTCGCCC GCCTCCCCGA CGTGGGCCCC GCCGCCGTCC AGGAAGCCGC CCCGCTCCTC
ACCCCCGGCC CGCTCACCCG CACCACCCTC GCCGCCGAAC TCCCCCTCTC CGAGCGCTAC
GCCGCCCACA CCACCCTCGC CAAAGCCCTC CCACCCGGCC CCCGCCGCAC CTGGCACCAG
GCCGCCACCG CCCCCGGCGC CCGCGACGCC CAAGCCGAGC GGTTGCACGC CGAGGCCCGT
CGCGCCCGCC GCTGCGGCGA CCACGTCCGC GCCGCCCGAG ACCACGACCG CGCCGCCGCC
CTCACCAGCG CCCCCGCCCT CCGCGCCCGC CGACTGGTCA GCGCCGCCGC CGACCACTGG
ACCTCGGGCT CCGCGGGCCC CGCCAGGTCC GCCCTCACCG CCGCCGCCCG CCTGTCCGAC
AGCCCGGAGC TCCGCGCGCT CGCCGACCTG GTCCGGGGCG GCCTCGACCT GGGCGGCGGC
CAACCGGACG GCGCCGCCCG CAGGCTCCTG CGCGCCGCCG CCGACCTCGC GGGCGCGCAC
CGCGCCCAAG CCGCCCTGGC CCTCGGCTTC GCGGGCGAGG CCGCGTGCAG CGCTGGCGAC
CACGCCCTGC ACACCGAGAT CGCCCACGCC GCCGCCGCCC TCCGCGCACC CGACGACCCC
GACCCGCAAG CCCTCGTCCT CGACCACGTC CTCGGCATGG AAGCCACCTT CCGGGGCCGC
CACGCCGAAG CCGTCCCGCT GCTGCGCGCC GTGGTCGCCA CCGCCGAGCG CACCCCCGTC
CCGCAGGCGG GCGTCTGGGG CGGGCACGCC GCCTACGTCC TCGGCGACTC CGCCAAGGCC
CACGAGCTCG CAGGCGGCGC GGTGGTCGCC ACCCGCGAGC GCGGGCTCAC CGCGTTCCTC
CCCTGGGCGC TGATCTACCA GGCCCTGTCG GCGCTCCTGC TCGACCGCCA CGCCCTCGCG
TTCTCCGCCG CGTTCGAGGG CCTGCACGCC GCCGAGGCCG TCGGCCAGCG CAACGCCGCC
GCCGACCACC TGATGATCCT CGCCCTGCTG TCCGCCCTGC GCGGCGACTG CGACACCGCC
CTGCACCGCG TCGACACCGC CGCCGAGCAG GTCTCCCGCC ACGGCCTCGG CCGCGCCGGA
ACGCTGGCGG CGTGGGCGCT GGCCTGCGTC GACCTGGCCC GCGAACGCCC CGTCGTCGCG
CTGGAGCGGT TGCGGGCGCT GGAGTCCGGC GGACGGTACG GGGGCGTGCA CGAGGGCATC
CGCACCATGG CCGTGCCGCA CCTGGTCGAG GCGGCGGCCG GGTGCGGCGA GGTCGGGTGG
GCCGAGCGGG AGCTGCGGCG GTTCCGGCGG TGGGCGGACA GCGGGGGCAG CGCCGCCCGG
CAGGCCGTGG TGCACCGGTG CCTCGGGGTC CTGGCCGACG GGGACGCCGC GCGGGAGCAC
TTCACCGAGG CGCTGCGGCT GCACCGGGGG AGCGGCGGGG CGCTGGAGCT GGCGAGGACG
CAGCTGGTCC ACGGGCGGTG GCTGCGCAGG TCCCGGCGGC CGAGGGCGGC GCGGGAGGTG
CTGCGGGAAG CCGCGGACAT CTTCGAGCGG CAGGAGGCCG AGCACTGGGC GGCGCGGGCG
CGCGCCGAGC TGCGGGCGGC GGGGGAGACG GCGCCCGGCG GTGAGCGGAC CGTCGAGCGG
ACGGGCGACC GACCCGGCGG CCGACCCGGC GGCCGGTCCG GCGGGGGCTT CGCCGAGCTG
ACCCCGCAGC AGGCCAGGAT CGCCCGCCTG GTCGCGGAGG GGGCGAGCAA CCGGGAGGTC
GCGGCCCGGC TGTTCCTGAG CCACCGCACC GTCGAGCACC ACCTGCGGAA CATCTTCGCC
CGCCTGGAAG TGCGGTCGCG GGTGGAGCTG GTCAAGCGGT TCGGCTGA
 
Protein sequence
MLLGRDRQRV AVDALLDHAR AGRGGALVLR GGPGTGKTAL LRAARRAAAD FADDPRLVLL 
CVDDAHLLDL SALLTLLPDL TSEPVAVLLA CETDLPHLPS VELTPLTHPD SLRVLHDLRP
GLPADLAADL AHLACGNPLA LVELAAALTA EHLGGTAPAP TALPADSLLR SRLRARFHAL
SPRARTAAAL SLVDPDLDPD TLARLPDVGP AAVQEAAPLL TPGPLTRTTL AAELPLSERY
AAHTTLAKAL PPGPRRTWHQ AATAPGARDA QAERLHAEAR RARRCGDHVR AARDHDRAAA
LTSAPALRAR RLVSAAADHW TSGSAGPARS ALTAAARLSD SPELRALADL VRGGLDLGGG
QPDGAARRLL RAAADLAGAH RAQAALALGF AGEAACSAGD HALHTEIAHA AAALRAPDDP
DPQALVLDHV LGMEATFRGR HAEAVPLLRA VVATAERTPV PQAGVWGGHA AYVLGDSAKA
HELAGGAVVA TRERGLTAFL PWALIYQALS ALLLDRHALA FSAAFEGLHA AEAVGQRNAA
ADHLMILALL SALRGDCDTA LHRVDTAAEQ VSRHGLGRAG TLAAWALACV DLARERPVVA
LERLRALESG GRYGGVHEGI RTMAVPHLVE AAAGCGEVGW AERELRRFRR WADSGGSAAR
QAVVHRCLGV LADGDAAREH FTEALRLHRG SGGALELART QLVHGRWLRR SRRPRAAREV
LREAADIFER QEAEHWAARA RAELRAAGET APGGERTVER TGDRPGGRPG GRSGGGFAEL
TPQQARIARL VAEGASNREV AARLFLSHRT VEHHLRNIFA RLEVRSRVEL VKRFG