Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_1795 |
Symbol | |
ID | 8325980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 1976134 |
End bp | 1977273 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644942344 |
Product | xylose isomerase |
Protein accession | YP_003099589 |
Protein GI | 256375929 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2115] Xylose isomerase |
TIGRFAM ID | [TIGR02631] xylose isomerase, Arthrobacter type |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000406384 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACCGACT TCAGCTTCGG CCTGTGGACG GTTGGCTGGC AGGGGCGTGA CCCGTTCGGG GACGCCACCC GGCCCGTCCT CGACGCGCCA ACGGCGGTGC GCAAGCTCGC CGAGCTGGGC GCCTGGGGCG TCACCTTCCA CGACGACGAC CTGATCCCCT TCGGGGCCGG CGCCGCCGAG CGGGACCGGC GGGTCTCCGC GTTCCGCGGC GCGCTCGACG AGACCGGGCT CGTCGTGCCG ATGGTGACCA CGAACCTGTT CACCCACCCC GTCTTCAAGG ACGGCGGCTT CACCAGCAAC GACCGGTCGG TGCGCCGGTT CGCGCTGCGC AAGGTGCTGC GCAACCTGGA GCTCGCCGCC GAGCTCGGCG CCAAGACGAT CGTCCTGTGG GGCGGTCGCG AGGGCTCCGA GACGGACGCG GGCAAGGACG TGCAGGCCGC CCTGGAGCGG TACCGCGAGG CGCTGGACAC GGTCGCGCAG CACTCCGTCG ACCAGGGCTA CGGCTTCCGG TTCGCGCTGG AGCCCAAGCC CAACGAGCCG CGCGGCGACA TCCTGCTGCC GACCGTCGGG CACGCGCTCG CGTTCATCTC CACCCTCCAG CACCACGAGC TGGTCGGCGT GAACCCCGAG GTCGGCCACG AGCAGATGGC CAACCTGAAC TTCGTCCACG GCATCGCGCA GGCGCTGTGG CAGAAGAAGC TGTTCCACAT CGACCTCAAC GGGCAGAAGG GGCCGCGCTT CGACCAGGAC CTGGTCTTCG GCCACGGCGA CCTGCTCTCG GCGTTCTTCC TGGTCGACCT CCTGGAGAAC GGCGGCTACG ACGGCCCCCG CCACTTCGAC TACAAGCCGC TGCGCACCGA GGACGTCGAC GGCGTGTGGG ACAGCGCCGC CGCCAACATG CGCACCTACA CCCTCCTCAA GGAGCGCGCG CAGGCCTACC GCGCCGACCC CGAGGTGCAG GAGGCGCTGC GGGTCAGCGG CGTCACCGAG CAGGCCGTGC CCACCCTCGG CGAGGGCGAG TCGATCGCGG ACTTCCTCGC GGCCGACGAG TCGTTCGACC CCGACAAGGC CGCCGAGCGC GGGTACGGGT TCGTGAAGCT GTCGCAGCTG GCCCTCGAGC ACCTCCTGGG CGCCCGCTGA
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Protein sequence | MTDFSFGLWT VGWQGRDPFG DATRPVLDAP TAVRKLAELG AWGVTFHDDD LIPFGAGAAE RDRRVSAFRG ALDETGLVVP MVTTNLFTHP VFKDGGFTSN DRSVRRFALR KVLRNLELAA ELGAKTIVLW GGREGSETDA GKDVQAALER YREALDTVAQ HSVDQGYGFR FALEPKPNEP RGDILLPTVG HALAFISTLQ HHELVGVNPE VGHEQMANLN FVHGIAQALW QKKLFHIDLN GQKGPRFDQD LVFGHGDLLS AFFLVDLLEN GGYDGPRHFD YKPLRTEDVD GVWDSAAANM RTYTLLKERA QAYRADPEVQ EALRVSGVTE QAVPTLGEGE SIADFLAADE SFDPDKAAER GYGFVKLSQL ALEHLLGAR
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